Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44575 249 / 1e-82 CP22, PSBS, NPQ4 PHOTOSYSTEM II SUBUNIT S, NONPHOTOCHEMICAL QUENCHING 4, Chlorophyll A-B binding family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042720 [exp] 320 / 1e-110 AT1G44575 318 / 1e-109 PHOTOSYSTEM II SUBUNIT S, NONPHOTOCHEMICAL QUENCHING 4, Chlorophyll A-B binding family protein (.1.2) Lus10018163 [exp] 271 / 2e-91 AT1G44575 328 / 7e-114 PHOTOSYSTEM II SUBUNIT S, NONPHOTOCHEMICAL QUENCHING 4, Chlorophyll A-B binding family protein (.1.2) Lus10025676 [exp] 271 / 3e-91 AT1G44575 323 / 4e-112 PHOTOSYSTEM II SUBUNIT S, NONPHOTOCHEMICAL QUENCHING 4, Chlorophyll A-B binding family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G083500 [exp] 273 / 8e-92 AT1G44575 288 / 4e-98 PHOTOSYSTEM II SUBUNIT S, NONPHOTOCHEMICAL QUENCHING 4, Chlorophyll A-B binding family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00504 [flax] [poplar] Chloroa_b-bind Chlorophyll A-B binding protein
Representative CDS sequence Show only first row Show all	>Lus10029680 pacid=23152014 polypeptide=Lus10029680 locus=Lus10029680.g ID=Lus10029680.BGIv1.0 annot-version=v1.0 ATGGCTCAAACGATGCTCTTCAGTTCAGGTGTCAACACAAGACCAGTTGTCGATTTCAAGATACGCTCTTCACTACTACTTCAGCCCAACTCCTCTGCTT CTCGCCTTCTCTACAGCCCACTTCCTTCTTCCCCTTCTACTTCGTCTTCTTCAAGATCGTTAAGAGTATTGGCTCTGTTCAAACCCAGAACAAAGGCTGC TCCTAAGAAGGCCGCTCCCCCACCCAAGCCTAAAGTTGAAGATGGTATCTTTGGAACATCCGGAGGAATCGGTTTCACCAAGCAGAATGAGCTTTTCGTC GGCCGAGTTGCCATGATTGGCTTTGCTGCATCATTGCTGGGAGAAGGGATAACAGGGAAGGGAATACTGTCACAGTTGAACTTGGAGACGGGAATCCCAA TTTACGAAGCAGAGCCACTCCTCCTCTTCTTCATCCTCTTCACTCTCTTGGGAGCCATTGGAGCATTGGGAGACAGAGGACGCTTCGTCGATGAAGACAC CACCGGCCTCGACAAGGCTGTCATCGCCCCTGGCAAGGGATTAAGGGCCACTTTGGGCCTCGGCGAAGGAGGTCCCCTGTTTGGATTCACAAAGGCGAAC GAGCTCTTCGTCGGAAGACTGGCACAGCTCGGGATCGCATTCTCTCTCATCGGAGAAGTTATCACAGGTAAGGGAGCTCTGGCTCAGCTCAACATCGAGA CAGGGATCCCGATCAACGAGATCGAGCCGCTCGTACTGTTCAATGTCTTGTTTTTCTTCATCGCTGCTTTGAATCCCGGCACCGGCAAGTTTGTCACTGA TGAAGGTGAAGATTAG
AA sequence Show only first row Show all	>Lus10029680 pacid=23152014 polypeptide=Lus10029680 locus=Lus10029680.g ID=Lus10029680.BGIv1.0 annot-version=v1.0 MAQTMLFSSGVNTRPVVDFKIRSSLLLQPNSSASRLLYSPLPSSPSTSSSSRSLRVLALFKPRTKAAPKKAAPPPKPKVEDGIFGTSGGIGFTKQNELFV GRVAMIGFAASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDEDTTGLDKAVIAPGKGLRATLGLGEGGPLFGFTKAN ELFVGRLAQLGIAFSLIGEVITGKGALAQLNIETGIPINEIEPLVLFNVLFFFIAALNPGTGKFVTDEGED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10029680 [exp]	0	1
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10042720 [exp]	1.0	0.9866
AT4G35250			NAD(P)-binding Rossmann-fold s...		Lus10022632 [exp]	3.0	0.9620
AT1G71500			Rieske (2Fe-2S) domain-contain...		Lus10001278 [exp]	3.5	0.9621
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10025676 [exp]	4.0	0.9488
AT2G42130			Plastid-lipid associated prote...		Lus10021055 [exp]	4.7	0.9478
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Lus10021824 [exp]	4.9	0.9584
AT1G67840		CSK	chloroplast sensor kinase (.1....		Lus10011413 [exp]	5.7	0.9169
AT5G07020			proline-rich family protein (....		Lus10024125 [exp]	6.3	0.9504
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Lus10001054 [exp]	7.7	0.9502
AT4G18810			NAD(P)-binding Rossmann-fold s...		Lus10029255 [exp]	8.5	0.9280

Compare expression of checked genes

Lus10029680 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.