Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21750 684 / 0 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) AT1G77510 670 / 0 ATPDI6, ATPDIL1-2 PROTEIN DISULFIDE ISOMERASE 6, PDI-like 1-2 (.1) AT5G60640 214 / 4e-62 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) AT3G54960 204 / 1e-58 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) AT1G52260 161 / 3e-43 ATPDI3, ATPDIL1-5 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, PDI-like 1-5 (.1) AT3G16110 159 / 2e-42 ATPDI4, ATPDIL1-6 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) AT2G47470 98 / 1e-22 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT1G35620 99 / 4e-22 ATPDI8, ATPDIL5-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) AT2G32920 80 / 8e-16 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1) AT1G04980 79 / 3e-15 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042721 [exp] 908 / 0 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10018156 [exp] 790 / 0 AT1G21750 710 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10025679 [exp] 552 / 0 AT1G21750 482 / 8e-169 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10037403 [exp] 232 / 7e-69 AT5G60640 729 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10015305 [exp] 221 / 7e-69 AT1G21750 189 / 1e-57 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10022581 [exp] 203 / 4e-58 AT5G60640 741 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10021478 [exp] 202 / 5e-58 AT5G60640 740 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10035870 [exp] 161 / 5e-43 AT1G52260 632 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, PDI-like 1-5 (.1) Lus10025792 [exp] 135 / 2e-34 AT3G16110 553 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G082100 [exp] 721 / 0 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.005G179000 [exp] 700 / 0 AT1G21750 680 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.009G013600 [exp] 244 / 2e-73 AT5G60640 712 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Potri.001G183500 [exp] 159 / 2e-42 AT3G16110 650 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1) Potri.019G082400 [exp] 108 / 3e-25 AT1G35620 549 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Potri.013G111400 [exp] 106 / 1e-24 AT1G35620 533 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 8, PDI-like 5-2 (.1) Potri.008G040100 [exp] 100 / 3e-22 AT3G54960 288 / 7e-92 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.014G122800 [exp] 96 / 3e-21 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.002G198300 [exp] 95 / 5e-21 AT2G47470 530 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.014G160000 [exp] 86 / 1e-17 AT1G04980 617 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10029681 pacid=23152123 polypeptide=Lus10029681 locus=Lus10029681.g ID=Lus10029681.BGIv1.0 annot-version=v1.0 ATGGTTGTTGACGGAGGAGTCTATGGTCAGGAAACAAGCATAGGCCCATCTAAGGTCAACGGTTTCATTAACGATGATCACGCCTTCATTTTCCTCGTTT ACTCGCTGTTTCCGCAGCTGAAGAGGCGGCAGCCGAGTCCAAGGGAGGCGGCAGCCGAGTCCAAGGAATTCGTGCTCACCCTTGACCACTCCAATTTCAC TGACACTGTCAGCAAGCACGATTTCATCGTCGTCGAGTTTTACGCTCCTTGGTGTGGCCACTGTAAGAGCCTAGCTCCAGAGTATGAGAAAGCTGCTTCA GCGTTGAGCAGTCATGATCCTGCGATCGTGTTGGCCAAAGTAGATGCCAGCGACGCTGTCAACAAAGATCTTGCCGCAGAGCATGATATTAAGGGATTCC CAACCCTGAAAATTTTCAGAAATGGGGGGAAGCTGGTTCAGGAGTTTAAAGGTCCTCGTGAAGCAGACGGTATCGTTGAGTATTTGCATAAACTGACTGG TCCTGCTTCAGCTGAAATCAAATCAGCAGAGGATGCTAGCGCTCTTTTTGATGAAACAAAGATATCTATCGTTGGTGTGTTCCCTAAGTTCTCTGGCCCA GAGTTCGAAAACTACTTAGCTTTGGCTGAGAAGTTGCGATCAGACTATGACTTTGGTCATACAACTGATGCCAAATTCCTTCCTCGTGGTGAATCCTCGG GGACTGGACCACTGGTTAGGTTGTTCAAGCCATTTGATGAACTCTTCGTTGATTCCAAGGATTTTGATGTGGATACTCTGGAGAAGTTTGTTAAGGACTC TAGCATACCCATCGTGACTATATTCAATAGTGACCCGAAAAATCACCCATATGTCATCAAGTACTTCGACAGTAGTGATGTCAAGGCTATGTTGTTTGCG AACTTCACCAATGATGTTAGTGATTCTTTTAAGTCCAAGTTCCGGGAAGTTGCCGAGCAATACAAGGGTCAAGGTCTGATCTTTCTGCTTGGAGATGCTG ACTCTAGTCAAGGTGCCTTCCAGTTCTTCGGACTTAAAGAAGACCAAGTTCCTCTACTTATCGTACAAACAGTTGACGGACAGAAGTATTTAAAGGCAAA CTTGAATCCCGAGGATATTGCTCCTTGGCTCAAGGATTACAAGGAAGGCAAAGTTCCAGCATACAAAAAATCCGAACCCATTCCCGAGACTAACAACGAG CCTGTGAAAGTAGTTGTTGCTGATACACTTGATGAAGTAGTTTTCAACTCTGGGAAAAATGTCCTTGTCGAGTTCTACGCTCCATGGTGTGGACACTGCA AGAAACTGGCTCCGATTCTAGACGAAGTTGCTGTTTCCTATGAGAATGATGCTGGTGTGCTCATTGCAAAACTAGATGCTACTGCGAACGATATCCCCAG TGATAAATTCGACGTGCAAGGATACCCGACACTGTACTTCCGGTCGGCAAGCGGGACCTTGGAGTCGTACGAAGGGGATCGAACTAAAGAAGACATCATC GACTTCATTGAGAAGAACAGAGATAAACCAGCAGCTTCCCAAGAACAAGAGCAGGAGAAGGAGAAGGCGAAGGAGAAAGCCACTAAAGATGAGCTCTAA
AA sequence Show only first row Show all	>Lus10029681 pacid=23152123 polypeptide=Lus10029681 locus=Lus10029681.g ID=Lus10029681.BGIv1.0 annot-version=v1.0 MVVDGGVYGQETSIGPSKVNGFINDDHAFIFLVYSLFPQLKRRQPSPREAAAESKEFVLTLDHSNFTDTVSKHDFIVVEFYAPWCGHCKSLAPEYEKAAS ALSSHDPAIVLAKVDASDAVNKDLAAEHDIKGFPTLKIFRNGGKLVQEFKGPREADGIVEYLHKLTGPASAEIKSAEDASALFDETKISIVGVFPKFSGP EFENYLALAEKLRSDYDFGHTTDAKFLPRGESSGTGPLVRLFKPFDELFVDSKDFDVDTLEKFVKDSSIPIVTIFNSDPKNHPYVIKYFDSSDVKAMLFA NFTNDVSDSFKSKFREVAEQYKGQGLIFLLGDADSSQGAFQFFGLKEDQVPLLIVQTVDGQKYLKANLNPEDIAPWLKDYKEGKVPAYKKSEPIPETNNE PVKVVVADTLDEVVFNSGKNVLVEFYAPWCGHCKKLAPILDEVAVSYENDAGVLIAKLDATANDIPSDKFDVQGYPTLYFRSASGTLESYEGDRTKEDII DFIEKNRDKPAASQEQEQEKEKAKEKATKDEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10029681 [exp]	0	1
AT2G18110			Translation elongation factor...		Lus10017261 [exp]	10.2	0.6381
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10042721 [exp]	25.9	0.5923
AT3G10670		ABCI6, ATNAP7	ATP-binding cassette I6, non-i...		Lus10043429 [exp]	36.9	0.5975
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10012751 [exp]	53.9	0.5026
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Lus10021016 [exp]	56.0	0.5584
AT2G19130			S-locus lectin protein kinase ...		Lus10033748 [exp]	67.1	0.4837
AT5G20920		EIF2 BETA, EMB1...	embryo defective 1401, eukaryo...		Lus10012186 [exp]	69.1	0.5415
AT3G10090			Nucleic acid-binding, OB-fold-...		Lus10017293 [exp]	70.1	0.5416
AT4G02610			Aldolase-type TIM barrel famil...		Lus10024848 [exp]	80.5	0.4678
AT1G61250		SC3	secretory carrier 3 (.1.2)		Lus10038302 [exp]	96.1	0.4564

Compare expression of checked genes

Lus10029681 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.