Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21740 624 / 0 Protein of unknown function (DUF630 and DUF632) (.1) AT1G77500 557 / 0 Protein of unknown function (DUF630 and DUF632) (.1) AT4G35240 266 / 4e-77 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT2G17110 235 / 1e-66 Protein of unknown function (DUF630 and DUF632) (.1) AT5G54480 176 / 5e-46 Protein of unknown function (DUF630 and DUF632) (.1) AT1G20530 158 / 2e-40 Protein of unknown function (DUF630 and DUF632) (.1) AT2G27090 153 / 2e-38 Protein of unknown function (DUF630 and DUF632) (.1) AT3G51290 142 / 6e-35 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT4G39790 134 / 2e-32 Protein of unknown function (DUF630 and DUF632) (.1) AT1G02110 131 / 2e-31 Protein of unknown function (DUF630 and DUF632) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042722 [exp] 1210 / 0 AT1G21740 659 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10023949 [exp] 308 / 1e-94 AT4G35240 655 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10014445 [exp] 305 / 7e-92 AT4G35240 712 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10025077 [exp] 207 / 2e-56 AT4G35240 237 / 3e-66 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10024007 [exp] 200 / 7e-54 AT1G21740 238 / 1e-66 Protein of unknown function (DUF630 and DUF632) (.1) Lus10024039 [exp] 163 / 1e-41 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10041710 [exp] 156 / 2e-39 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10015534 [exp] 146 / 3e-36 AT2G19090 480 / 4e-160 Protein of unknown function (DUF630 and DUF632) (.1) Lus10028431 [exp] 138 / 1e-33 AT3G51290 728 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G082000 [exp] 834 / 0 AT1G21740 644 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G179100 [exp] 814 / 0 AT1G21740 617 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G070200 [exp] 323 / 9e-99 AT1G21740 315 / 3e-94 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G142900 [exp] 299 / 3e-89 AT4G35240 621 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.004G182900 [exp] 296 / 3e-88 AT4G35240 639 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.005G249400 [exp] 222 / 1e-62 AT1G20530 359 / 9e-116 Protein of unknown function (DUF630 and DUF632) (.1) Potri.004G177200 [exp] 218 / 2e-60 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1) Potri.002G011700 [exp] 215 / 4e-60 AT4G35240 348 / 5e-109 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.005G108400 [exp] 217 / 6e-60 AT1G21740 231 / 4e-64 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G137500 [exp] 198 / 1e-53 AT3G51290 228 / 4e-64 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [flax] [poplar] DUF632 Protein of unknown function (DUF632)
Representative CDS sequence Show only first row Show all	>Lus10029683 pacid=23151979 polypeptide=Lus10029683 locus=Lus10029683.g ID=Lus10029683.BGIv1.0 annot-version=v1.0 ATGGGACGCGAAATGGAGATGCCTGCGACTTACTACGGCGATTTCAACAATTATCCTGCTCAGGGAAATTGGGGTTACGGTGGCTACACAGGGGAACCCA TTCCTCCGAGTAATCCCTACCCGTACTCGGATCCGTATGCCAATCCCTACCCGTACCCTGCTCCTTATTCAAACCCCTACCCGGATGTGAACCCGTATAA CCCAACCATAAACCCTTACCCAAATCAGAACATGTATTACATGAAGAAGTCGACCACGCCGGCGAAAACCGTCGTTGTCGAGGATCCATCGGCATCCAAT GGGTATTGGGGTTCAGGAAGTTATTACGGTAACGGAGCTGGATACTTTGGCGGGTATCCGCCGCCACCGATGAGGGAGCCGAGTCCACAGAAGCCTCCGC CGGCACCACCGTCTCCGCCGAGGGCGTCCACTTGGGATTTTCTTAACGTTTTTGAATCAGTTGACAACGGTGGTGCCGGCGGCGGCGGATTCCATGGCTA TCACACGTCGGATAGGTATGTGTACGGATCAATCACGAGTAGTCCTGATTCTAGAGAGGTCAGAGAAAGGGAAGGGATTCCTGATTTGGAGGATGAGACG GAGCATGAGGTGATCAAGGAAGTTCCCAGAGAGAAGAAGAGAACGAATGAAGAGCGATCAAGAGTGAATAATAACAATGGGAAATCCAGATTCAATGAGG AGTTCTTGCACAATAATTACGGGGAAGGGACCTCCAAGCCTGTGGCGGTTGATACCAGCAGTAGCAGCATTGAGAGTATTGAATCATCTATGAGAGGCAG AAGGAATTCGAGTAAAGGTAAAGGAATCAAGACCAGTATGAGCCCTGATACGATTCCTAGTCCGGGTAGCATTGTCTCCATGAGTCCCCCCCAGGAAGAG GAACTTGTGAAGAGGAAGAAAGGCGTGAGCTTTGAGGTGGTGGAGGAGGCGGCATCTAGTGTCGCCATGGATGTTGAATCCGAGAAACCAAATATCAGTA TGATGAATGCATTGTCGGCTCATGGAACTAGAGACATTCAGGAAGTGGTGAAAGAAATCAGGGATGAGTTTGAGACGGCCACCAATTATGGGAAGGAGAT TGCATTTATGCTTGAAGTCAACAAACTGCCTTACCAAAGGCAAACTACACCACTTAAAGTGTCACTCTTGAGAATTCTATCTATGAAAGCTCAAGCCAAG TCATCAGTTCAAATTTCTTCCAGAGTTATGAAGATTGCAAAGATGTACTCTGAACAGACTGTAAATGAGTTTGATATTCATCCCGTCAACCTTTCATCCA CTCTTGCAAAGCTTTATGCGTGGGAAAAGAAACTTTACAAGGAGGTTAAGGAAGAAGAGAGGCTGCGGGTTATATATGAAAAGGAGTGCAAGAGACTAAA ACTATTAGATGACAGGGGTGAAGAGTCTAGTAAAATCGAGGCCACACAGGATTCGATACGGAAGTTGATGACAAAACTCAATGTTTGTGTCAGAGCTGTT GATTCAATATCTGTCAAGATACACAAGCTACGGGATGAGGAGTTGCAACCCCAAATTACAGCGTTGATTCATGGATTGATACGGATGTGGAGGTCAATGC TGAGATGTCATCAGAAACAGTTCCAAGCTATAATGGAGAGCAAAGTTCGGTCTCTAAAGGCAAACACACTGCAGAGAGATTCAGGCTTAAAAGCTACTCT AGAGCTTGAAATGGAGCTTGTGGATTGGTGTTCTCGCTTCAACAATTGGATCAAGACCCAGAAATCTTATGTCGAGTCGTTAAATAAATGGCTTTTGAAG TGCATCAACCAAGAACTTGAAGAAACTGCCGATGGAGTTGCACCATTCTCCCCAAGTAGGATCGGAGCTCCGCCCATTTTTGTGATATGCAACGATTGGT ACGAAGGAATGCTCAGGGTTTCTGAGAAAGGGGTGGAAAACGCAATGCTCGACTTCGCATCCAATTTGCAGCAGCTATGGGAACGGCAAGATCAGGAACA GCGGCAGAGAATCAAAACCGAGTACCTGAAAAAGGATCTCGAGAAACAGCTCAAAACGTTGAGAATGGAGAGGGGGAAGAGAAGCGATGAGAAGCACGAG CGAGATGCTGGATCATCGGATAAAGCAGTGTCCAAGGTTCCTTCTGACAGCGGTGTTTCGCCATTAGATGACCTGAAAGTGGACTTGGATTCGATGAGAA AGAAGTTAGATGAAGAGAGAGCTAGGCACAAGGAGACGGCTAAGCTGGTTCATGATGCAGCTTCTAGTAGCCTGCAAGCTGGTTTGCTTCCGATTTTCGA GGCTCTGGGCAGTTTCACCTCAGAAATTTTGAAAGTTCATGAGGATGTTAGACTTGTGGAGGGAACCTTTTAG
AA sequence Show only first row Show all	>Lus10029683 pacid=23151979 polypeptide=Lus10029683 locus=Lus10029683.g ID=Lus10029683.BGIv1.0 annot-version=v1.0 MGREMEMPATYYGDFNNYPAQGNWGYGGYTGEPIPPSNPYPYSDPYANPYPYPAPYSNPYPDVNPYNPTINPYPNQNMYYMKKSTTPAKTVVVEDPSASN GYWGSGSYYGNGAGYFGGYPPPPMREPSPQKPPPAPPSPPRASTWDFLNVFESVDNGGAGGGGFHGYHTSDRYVYGSITSSPDSREVREREGIPDLEDET EHEVIKEVPREKKRTNEERSRVNNNNGKSRFNEEFLHNNYGEGTSKPVAVDTSSSSIESIESSMRGRRNSSKGKGIKTSMSPDTIPSPGSIVSMSPPQEE ELVKRKKGVSFEVVEEAASSVAMDVESEKPNISMMNALSAHGTRDIQEVVKEIRDEFETATNYGKEIAFMLEVNKLPYQRQTTPLKVSLLRILSMKAQAK SSVQISSRVMKIAKMYSEQTVNEFDIHPVNLSSTLAKLYAWEKKLYKEVKEEERLRVIYEKECKRLKLLDDRGEESSKIEATQDSIRKLMTKLNVCVRAV DSISVKIHKLRDEELQPQITALIHGLIRMWRSMLRCHQKQFQAIMESKVRSLKANTLQRDSGLKATLELEMELVDWCSRFNNWIKTQKSYVESLNKWLLK CINQELEETADGVAPFSPSRIGAPPIFVICNDWYEGMLRVSEKGVENAMLDFASNLQQLWERQDQEQRQRIKTEYLKKDLEKQLKTLRMERGKRSDEKHE RDAGSSDKAVSKVPSDSGVSPLDDLKVDLDSMRKKLDEERARHKETAKLVHDAASSSLQAGLLPIFEALGSFTSEILKVHEDVRLVEGTF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21740			Protein of unknown function (D...		Lus10029683 [exp]	0	1
					Lus10006631 [exp]	1.7	0.8417
AT2G37650	GRAS	SCL9	GRAS family transcription fact...		Lus10024384 [exp]	2.0	0.8651
AT1G77500			Protein of unknown function (D...		Lus10042723 [exp]	3.7	0.8514
AT1G21740			Protein of unknown function (D...		Lus10042722 [exp]	6.5	0.8007
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10025632 [exp]	7.3	0.7579
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10025108 [exp]	9.9	0.7992
AT5G58630			unknown protein		Lus10018244 [exp]	10.6	0.7953
AT2G38620		CDKB1;2	cyclin-dependent kinase B1;2 (...		Lus10035614 [exp]	11.3	0.8344
AT2G46570		LAC6	laccase 6 (.1)		Lus10005976 [exp]	13.5	0.7807
AT4G18340			Glycosyl hydrolase superfamily...		Lus10038501 [exp]	16.2	0.7943

Compare expression of checked genes

Lus10029683 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.