Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44170 678 / 0 ALDH4, ALDH3H1 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) AT4G34240 590 / 0 ALDH3I1 aldehyde dehydrogenase 3I1 (.1.2) AT4G36250 423 / 2e-144 ALDH3F1 aldehyde dehydrogenase 3F1 (.1) AT3G66658 136 / 2e-34 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT1G74920 125 / 7e-31 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT1G79440 122 / 8e-30 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT1G23800 115 / 2e-27 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT3G48170 110 / 7e-26 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT3G48000 101 / 9e-23 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT3G24503 92 / 7e-20 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025681 [exp] 763 / 0 AT1G44170 743 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10018153 [exp] 761 / 0 AT1G44170 734 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10042724 [exp] 659 / 0 AT1G44170 605 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10015688 [exp] 596 / 0 AT4G34240 674 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Lus10037694 [exp] 587 / 0 AT3G02850 659 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10002557 [exp] 423 / 5e-137 AT3G12080 869 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Lus10041806 [exp] 403 / 1e-136 AT4G36250 640 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10031280 [exp] 392 / 1e-132 AT4G36250 555 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10031849 [exp] 390 / 8e-132 AT4G36250 550 / 0.0 aldehyde dehydrogenase 3F1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G179300 [exp] 729 / 0 AT1G44170 736 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Potri.002G081800 [exp] 707 / 0 AT1G44170 731 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Potri.005G069800 [exp] 614 / 0 AT4G34240 626 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Potri.001G412900 [exp] 609 / 0 AT4G34240 678 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Potri.001G259100 [exp] 431 / 1e-147 AT4G36250 556 / 0.0 aldehyde dehydrogenase 3F1 (.1) Potri.007G017100 [exp] 414 / 3e-141 AT4G36250 635 / 0.0 aldehyde dehydrogenase 3F1 (.1) Potri.008G106000 [exp] 132 / 5e-33 AT3G66658 1049 / 0.0 aldehyde dehydrogenase 22A1 (.1.2) Potri.012G075600 [exp] 124 / 1e-30 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.010G174000 [exp] 123 / 4e-30 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Potri.015G070600 [exp] 122 / 8e-30 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [flax] [poplar] ALDH-like PF00171 [flax] [poplar] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Lus10029684 pacid=23152075 polypeptide=Lus10029684 locus=Lus10029684.g ID=Lus10029684.BGIv1.0 annot-version=v1.0 ATGGCGACGACGACTGTCGAGAAGACGGTTTTCGACGGGGATGAAGCAAAGCGATTGGTCAACGAGCTCAGAGCCGGTTTTGATTCCGGCAGGACTCGGA GCGACGACTGGAGAGTGACTCAGCTGAAGAATATCTTAAGGATGTGCGACGAGAGCGAGAAAGAGGTCATCGAGGCTCTTCATCAGGATCTCGCCAAGCC TGAACTCGAATCAACTCTCTATGAGCTGGGTATGATAAAGAACGCATGTAAAGTGGCAATTAAGGAACTGAAGAACTGGATGAGACCAGAGAAGGCAAAA ACCTCAGTGACGACTTTTCCTTCATCAGCTGAAATTGTGTCTGAGCCATTTGGAGTTGTATTGATAATTTCTGCATGGAATTATCCTTTCCTGCTATCCA TTGAGCCAGTAGTTGGAGCTATAGCAGCTGGGAATGCTGTCGTCTTGAAACCATCAGAGCTAGCTCCGGCTTCATCATCATTGCTTGCAAAACTGTTTGC AAAGTATTTGGATAATTCTTCAATAAAGGTTGTTGAGGGCGCTGTAGCTGAAACATCCGCTTTACTAGAGCAAAAGTGGGACAAAATAATGTATACAGGA AACAGCAGAGTTGGGCGTATTGTGATGGCTGCTGCTGCAAAGCACTTAACTCCTGTCATTATGGAGCTTGGGGGAAAGTGTCCAGTGGTTGTTGATTCGG ACATTGATTTACAGGTTGCAATTAGGCGAATCATCGTAGGCAAGTGGGGTTGTAACAATGGACAAGCATGCATATCCCCAGATTACATTTTAACAACCAA AGATTATGCACCAAAGCTGGTTGATGTTTTAAAAACAGAACTTGAGGGATTTTATGGGAAGAATCAATTGGAGTCGAAGGATTTGTCTCGTATTGTGAAT AGTAACCATTTCTCCAGGCTATCAAAGCTACTGGATGATGACAAGGTTTCTGGTAAAATTGTCTATGGCGGTGAAAGAGACAAAGTGAATCTGAGAATCT CTCCGACCATTTTGCTAGATGTTCCGAGGGATTCCTTGATCATGAATGAAGAGATATTTGGCCCCTTGCTTCCTATCCTCACGTTGAACAATATCGACGA GAGCTTCGATGTGATAAACTCGGGAACAAAGCCACTAGCAGCCTATATATTCACCAACAACAAGAAGCTGAAAGAAAAGTTTGTAATGTCAGTCTCTTCA GGAGGCATCGTCGTCAACGACACTACAATTCATCTAGCTGTTCATACCGTGCCGTTTGGAGGTGTTGGCGAGAGTGGGATGGGGTCATACCATGGGAAGT TCTCATTTGATGCCTTCAGCCACAAGAAAGCAGTTGTTTATCGAAGTTTCACAGCTGATGCTTCCTTGAGGTACCCACCATACACAAGCTTCAAACTAAG ATTGATGAAAGCTCTAATGAGCGGCAGTTTACCTGAAATTCTACGTGCACTATTTCAAGGGTCTAAGAGTTGA
AA sequence Show only first row Show all	>Lus10029684 pacid=23152075 polypeptide=Lus10029684 locus=Lus10029684.g ID=Lus10029684.BGIv1.0 annot-version=v1.0 MATTTVEKTVFDGDEAKRLVNELRAGFDSGRTRSDDWRVTQLKNILRMCDESEKEVIEALHQDLAKPELESTLYELGMIKNACKVAIKELKNWMRPEKAK TSVTTFPSSAEIVSEPFGVVLIISAWNYPFLLSIEPVVGAIAAGNAVVLKPSELAPASSSLLAKLFAKYLDNSSIKVVEGAVAETSALLEQKWDKIMYTG NSRVGRIVMAAAAKHLTPVIMELGGKCPVVVDSDIDLQVAIRRIIVGKWGCNNGQACISPDYILTTKDYAPKLVDVLKTELEGFYGKNQLESKDLSRIVN SNHFSRLSKLLDDDKVSGKIVYGGERDKVNLRISPTILLDVPRDSLIMNEEIFGPLLPILTLNNIDESFDVINSGTKPLAAYIFTNNKKLKEKFVMSVSS GGIVVNDTTIHLAVHTVPFGGVGESGMGSYHGKFSFDAFSHKKAVVYRSFTADASLRYPPYTSFKLRLMKALMSGSLPEILRALFQGSKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10029684 [exp]	0	1
AT2G37050			Leucine-rich repeat protein ki...		Lus10004275 [exp]	3.7	0.9672
AT3G50210			2-oxoglutarate (2OG) and Fe(II...		Lus10006259 [exp]	4.2	0.9622
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Lus10038086 [exp]	4.5	0.9651
AT3G21530			DNAse I-like superfamily prote...		Lus10012772 [exp]	4.9	0.9559
AT4G35900	bZIP	ATBZIP14, FD-1,...	Basic-leucine zipper (bZIP) tr...		Lus10017284 [exp]	4.9	0.9431
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Lus10010580 [exp]	7.7	0.9616
AT2G44420			protein N-terminal asparagine ...		Lus10033495 [exp]	8.4	0.9530
AT5G03330			Cysteine proteinases superfami...		Lus10026525 [exp]	8.7	0.9458
AT1G30270		PKS17, ATCIPK23...	SNF1-RELATED PROTEIN KINASE 3....		Lus10042816 [exp]	9.5	0.9408
AT2G40260	GARP		Homeodomain-like superfamily p...		Lus10040945 [exp]	9.8	0.9569

Compare expression of checked genes

Lus10029684 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.