Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11040 251 / 2e-78 HSP40/DnaJ peptide-binding protein (.1) AT1G44160 224 / 6e-69 HSP40/DnaJ peptide-binding protein (.1) AT3G08910 176 / 6e-51 DNAJ heat shock family protein (.1) AT5G25530 174 / 3e-50 DNAJ heat shock family protein (.1) AT5G01390 171 / 4e-49 DNAJ heat shock family protein (.1.2.3.4) AT2G20560 166 / 4e-47 DNAJ heat shock family protein (.1) AT1G10350 165 / 1e-46 DNAJ heat shock family protein (.1) AT4G28480 163 / 5e-46 DNAJ heat shock family protein (.1.2) AT1G59725 161 / 3e-45 DNAJ heat shock family protein (.1) AT3G47940 160 / 1e-44 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042725 [exp] 567 / 0 AT1G11040 256 / 2e-80 HSP40/DnaJ peptide-binding protein (.1) Lus10025682 [exp] 350 / 5e-117 AT1G11040 241 / 4e-75 HSP40/DnaJ peptide-binding protein (.1) Lus10018152 [exp] 350 / 5e-117 AT1G11040 246 / 5e-77 HSP40/DnaJ peptide-binding protein (.1) Lus10027803 [exp] 166 / 4e-47 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10005033 [exp] 166 / 5e-47 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1) Lus10015402 [exp] 162 / 1e-45 AT2G20560 483 / 7e-173 DNAJ heat shock family protein (.1) Lus10017687 [exp] 161 / 2e-45 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10036668 [exp] 162 / 3e-45 AT3G47940 454 / 6e-161 DNAJ heat shock family protein (.1) Lus10013280 [exp] 162 / 6e-45 AT1G10350 422 / 5e-148 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G081700 [exp] 297 / 2e-97 AT1G11040 253 / 1e-80 HSP40/DnaJ peptide-binding protein (.1) Potri.005G179400 [exp] 272 / 2e-87 AT1G11040 250 / 2e-79 HSP40/DnaJ peptide-binding protein (.1) Potri.001G211800 [exp] 211 / 3e-64 AT1G11040 197 / 2e-59 HSP40/DnaJ peptide-binding protein (.1) Potri.011G057601 [exp] 176 / 5e-51 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 174 / 4e-50 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 172 / 2e-49 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 168 / 8e-48 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.007G135900 [exp] 163 / 3e-47 AT2G20560 248 / 6e-82 DNAJ heat shock family protein (.1) Potri.007G135700 [exp] 166 / 6e-47 AT2G20560 416 / 3e-146 DNAJ heat shock family protein (.1) Potri.007G135800 [exp] 160 / 5e-46 AT2G20560 261 / 6e-87 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01556 [flax] [poplar] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10029685 pacid=23151963 polypeptide=Lus10029685 locus=Lus10029685.g ID=Lus10029685.BGIv1.0 annot-version=v1.0 ATGGTAGAAGAAGATCACAATCATCATTCTCAGCATCGCATTGGTTCCTCCTCTAATGTTGATTGTGGCAGCCGCGATGAACATTATAAGGCTAACAAGA AGAGAAATATTCCGACCGAGAAGAGGCCTTTGAAAATTAAGGATTTCTTAAGAGTTTACGGTCATGCAATTACGAGATTAAATCGTGTTACGAGTTTTTC TTTTTCTCCTCCCAAATCATCTCCTTCTCCGCCTCTATCTAGGTCGTCTAAATGTGATGTGGCCGGATCTGAAGAAGCTCAGCTGGCTCTTGATATAGAG GATAGAGTTGAAATTCAAAGGCAACTTGTTGAAGAAGTAGATAACAACACAATGAATGGAATCCACAGCGCAAGGTACAACCCACCAGACAATCCAAGCA CCACATCGGCGACTACTCCAAACAGCTTCTTCAAGCAGAAAACCAAAGACGACATCCTCCGAACCATAACATCCCCACTCTCCAGAATCACAAGCAGAAG GAGCCCTTCTCCTTCCCCAAGAACATCATCCTCCTCCTCCTTTTCCTCCTCCCTTTCGAAAAGCGCCACCAGACGTAGTGTATCTCCACTGTCGACCTTC GTCCACAAATGCATCACCGGTCGAAAAAGCAGCAGTGTAGATCATGATCACTCCTCCCCTGCTACGGCTCCATCCACATTGTCCAGGAACAATACCACTA GTACTACTAGTACCAACAAGGCATCAGCAGCTTCATCACTTACTAGAGACGTCAGCCGGAGAAGCAATGCCTCCAGTGCTACTACTACTGCTCCGAGCCC TGTGTTTTCGAGGAACCCTAGCGAGCGAAGCACTACGCCGATCATGTTCTCCAACTCCACTGGCCGGAAGGTGAAACCCCCGCCGGTTCAGAAGAACCTC GAGTGCACACTCGAGGAGTTGTTCTATGGTTGCACCAAGAAGGTCAAGGTTACAAGAGATGTCCTCACTGATAGAGGACAAATAGTTAAGGAGGAGGAGA TACTATCAATCGAAGTGAAGCCAGGTTGGAGGAAGGGGACCAAGGTAACATTCGAAGGGATGGGGAACGAGAGGCTGGGAGCTGAACCGGCAGACGTGAC ATTCGTGATCGCGGAGAAGCGACACTCACTGTTTCGACGAGAAGGGGACGACTTGGAGATAGCAGTAGAGATCCCTCTGGTGCAGGCTCTCACCGGATGC GACATCTCCATCCCTCTCATGAGTGAAACCGGGGAGACAATGAACCTACTGATCCAGGACGTCATTTCCCCTGGCTACAAGAAGGTCATCCCTGGTCAGG GGATGCCTAAATCCAAAGAGCTAAACATGAGAGGGAACCTCAAAGTTACCTTCTTGGTCGAGTTTCCAGTCGAATTGACCGAAGAACAGAGATCACAGGT TGTTAGCATTTTAAAGGGTTCTTCTTGA
AA sequence Show only first row Show all	>Lus10029685 pacid=23151963 polypeptide=Lus10029685 locus=Lus10029685.g ID=Lus10029685.BGIv1.0 annot-version=v1.0 MVEEDHNHHSQHRIGSSSNVDCGSRDEHYKANKKRNIPTEKRPLKIKDFLRVYGHAITRLNRVTSFSFSPPKSSPSPPLSRSSKCDVAGSEEAQLALDIE DRVEIQRQLVEEVDNNTMNGIHSARYNPPDNPSTTSATTPNSFFKQKTKDDILRTITSPLSRITSRRSPSPSPRTSSSSSFSSSLSKSATRRSVSPLSTF VHKCITGRKSSSVDHDHSSPATAPSTLSRNNTTSTTSTNKASAASSLTRDVSRRSNASSATTTAPSPVFSRNPSERSTTPIMFSNSTGRKVKPPPVQKNL ECTLEELFYGCTKKVKVTRDVLTDRGQIVKEEEILSIEVKPGWRKGTKVTFEGMGNERLGAEPADVTFVIAEKRHSLFRREGDDLEIAVEIPLVQALTGC DISIPLMSETGETMNLLIQDVISPGYKKVIPGQGMPKSKELNMRGNLKVTFLVEFPVELTEEQRSQVVSILKGSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11040			HSP40/DnaJ peptide-binding pro...		Lus10029685 [exp]	0	1
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10037262 [exp]	9.7	0.8940
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10024196 [exp]	13.0	0.8628
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Lus10037085 [exp]	14.7	0.9131
					Lus10000578 [exp]	19.5	0.8597
AT3G26380			Melibiase family protein (.1)		Lus10006467 [exp]	23.7	0.9102
AT1G27040			Major facilitator superfamily ...		Lus10006477 [exp]	25.7	0.9035
AT1G12110		CHL1-1, CHL1, B...	CHLORINA 1, ARABIDOPSIS THALIA...		Lus10032252 [exp]	27.1	0.9092
AT4G17900			PLATZ transcription factor fam...		Lus10004577 [exp]	29.9	0.9093
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10004705 [exp]	31.2	0.8997
AT3G09010			Protein kinase superfamily pro...		Lus10001212 [exp]	37.3	0.8889

Compare expression of checked genes

Lus10029685 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.