Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49600 1250 / 0 SUP32, ATUBP26, UBP26 ubiquitin-specific protease 26 (.1) AT3G11910 136 / 3e-32 AtUBP13, UBP13 ubiquitin-specific protease 13 (.1.2) AT5G06600 133 / 3e-31 AtUBP12, UBP12 ubiquitin-specific protease 12 (.1.2.3) AT2G22310 117 / 4e-28 ATUBP4 ubiquitin-specific protease 4 (.1.2) AT4G39910 115 / 2e-27 ATUBP3 ubiquitin-specific protease 3 (.1) AT1G17110 109 / 4e-24 UBP15 ubiquitin-specific protease 15 (.1.2) AT5G57990 105 / 1e-22 UBP23 ubiquitin-specific protease 23 (.1) AT3G14400 103 / 3e-22 UBP25 ubiquitin-specific protease 25 (.1) AT2G24640 101 / 4e-22 UBP19 ubiquitin-specific protease 19 (.1.2) AT5G65450 101 / 1e-21 UBP17 ubiquitin-specific protease 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042726 [exp] 2023 / 0 AT3G49600 1296 / 0.0 ubiquitin-specific protease 26 (.1) Lus10029309 [exp] 136 / 3e-32 AT5G06600 1957 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10008949 [exp] 136 / 3e-32 AT5G06600 1904 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10043456 [exp] 136 / 4e-32 AT5G06600 1925 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10034130 [exp] 135 / 9e-32 AT3G11910 1888 / 0.0 ubiquitin-specific protease 13 (.1.2) Lus10041705 [exp] 117 / 6e-28 AT4G39910 682 / 0.0 ubiquitin-specific protease 3 (.1) Lus10024043 [exp] 117 / 6e-28 AT4G39910 682 / 0.0 ubiquitin-specific protease 3 (.1) Lus10014333 [exp] 109 / 3e-25 AT4G39910 643 / 0.0 ubiquitin-specific protease 3 (.1) Lus10035825 [exp] 107 / 3e-23 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G081600 [exp] 1372 / 0 AT3G49600 1251 / 0.0 ubiquitin-specific protease 26 (.1) Potri.005G179500 [exp] 1350 / 0 AT3G49600 1245 / 0.0 ubiquitin-specific protease 26 (.1) Potri.010G245100 [exp] 135 / 6e-32 AT5G06600 1907 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.008G012600 [exp] 135 / 8e-32 AT5G06600 1909 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.016G064100 [exp] 134 / 1e-31 AT5G06600 1943 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.006G198300 [exp] 130 / 2e-30 AT5G06600 1954 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.007G093600 [exp] 117 / 7e-28 AT4G39910 679 / 0.0 ubiquitin-specific protease 3 (.1) Potri.005G074900 [exp] 115 / 2e-27 AT4G39910 678 / 0.0 ubiquitin-specific protease 3 (.1) Potri.005G156900 [exp] 106 / 6e-23 AT4G24560 639 / 0.0 ubiquitin-specific protease 16 (.1) Potri.001G394600 [exp] 104 / 1e-22 AT3G14400 653 / 0.0 ubiquitin-specific protease 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Lus10029686 pacid=23152071 polypeptide=Lus10029686 locus=Lus10029686.g ID=Lus10029686.BGIv1.0 annot-version=v1.0 ATGGATTTCCAGCTGCCTCCACCGCTCCACGATAACTGTTGGAATCTTGGTCGCTTGTCGATCGAACCTCCAGCTTTTTTTCACAATCGCCAAAACTCCA GTGTTCTCGGCAAGGAAAATAGTAGGATGAGCAGGCCAACTACACGCAGCAAAAATAAAAGGCACAGATCGGGTGAAAATATTAATATCACCAGTGAAAT ATTGAGGAAAGTTCATGCAACTGGAGAATTAACCACTGAAAATGTTGATCAGCTCTATATGATCTTGAAACCTGTCTGCCAAGGCTGCCGTGTGAATACC AAGGATAACCCCAACTGCTTCTGTGGGTTGATTCCAGCTCAAAGCGGGAGTCGGAAGTCTGGGTTATGGCAGAAAACGACAGATATCCTTGAAGCACTTG GACCAGATCCTTCTGATGATCTTCGTGCTGATGACTCTCCAGCCGGACTCACAAACTTGGGTGCAACATGCTATGCTAATAGCATACTTCAATTTCTGTA TATGAATACTGCATTTAGAGATGGTCTTTTCTCAGTTGAGCCGGAGGTCTTGAAGCAACAACCAGTACTCAATGAAATTGCTCGGCTTTTTGCACGTTTG CATGCCAGTAAAATGGCTTATATTGATTCTGCTCCATTCGTAAAGACTCTGGAGTTGGACAATGGGGTGCAGCAGGATAGCCACGAGTTTCTTACATTAC TTCTTTCCTTGCTTGAACGTTGTCTGAGCCATTCTAGCATCTCCAAGACAAAATCAATCGTACAAGATCTTTTCCGTGGAAGTGTGTCCCATGAAACAAA GTGCTCAAAGTGTAGTAATGTTTCTGAAGCTTCTTCAAAAATGGAAGACTTTTATGAGCTAGAGTTGAATGTTAAAGGCATGAAAAGCTTGAAGGATAGT TTGGATGACTATCTTAGTGTGGAGGACCTTGACGGTGATAACCAGTATTTCTGCAGTTCGTGTAACATGAGAGTTGATGCTACACGTAGCATCAAGTTGA GAACACTACCTGCTGTCTTGAATTTTCAGCTTAAGCGTTGCATCTTCCTCCCAAAGACCACCACAAAAAAGAAAATTACATCTGCATTTGGGTTCCCCGA AGAACTTGATATGGGACAGAGGCTTTGGGAACCGTCTCAGAATGATTGGATCTATAACTTGTCGGCTGTGTTGATCCACAAAGGGTCTGCTGTAAACAGT GGCCATTACGTTGCACATATCAAGGATGAAAATACTGGACAGTGGTGGGAGTTTGATGATGAAAGTGTCTCAAATTTGGGTCATCATCCCTTTGGAGAAA GCTCTTCACGTTCCACTGCTGAAAATCTTCCTAGTAAAGTGAATGGAGGACTTGAATCGGGTTCAAATGGAAGTCACTTAGACGCTCAATTGCCTCAACC TTTAGACTCTGATTCTTCCAGTAATGCCAAGACGTTTTCATCAAGTGATGCATATATGCTGATGTATACTCTTAGGTCTCTACGTAATGCTGATGATAAA ACATGTAGGATTAGCGGTGTCAGTAGTGTGGAACTGAAAGGTCAATGTAGCTCTTCGCATGATGATTTCTTCTTGCCATCTCATCTTTCTGAAGATATTC AGGAACAGAATGCATTGTATGTTAATGCTTGCCAAACGTACCAAGATAAAAAGGAAGCTGAGATGCTTCATGTTACTGAGCGAAGACAAGAGGTGAGATC AATTCTTTCTGAAGCTCCTGTTCATTCATTGGGAGAACCTTTTTACTGGATTTCTACAGACTGGCTTCGCCATTGGGCTGATGACTTCACTGCATCTCCC TTGGATAACACATCCATTCTTTGCTTGCACGGAAAGGTCCCTGTTTCAAAGCTTAGCTCAATGAAACGGTTGTCTGCTGAAGCTTGGGCCAAGTTGTTGT CTAAGTATGGTGGAGGGCCAACACTTACGAATGAGGACTACTGCAAAGCATGCCTTCTTGATGGTGCCAAAACTTTGGTGTCTGCTGATAGCTATCGGGA TAGGAGAACACTAATGAAGGAGCTTGCAGCTGATGTTCTAGCTGGCAAGACATTGGATGATGAAACATATTATTATGTATCGAAATCATGGCTGCATCAG TGGATTAAAAGGAAAAACCTCGATGCCCCTAGTGAAGCTGATGCAGGACCAACTGTTTCGATTACATGTCCACATGGCCACCTACTTCCTGACCAAGCTC CTGGTGCCAAACGATTGCTGGTTCCAAGGAATCTGTGGGACTTCTTCTGTGAAGATGCCTTGCATGTTAAACCTGATGATCCAAGTGGTTGTATCCCTTT CCCCTTTGGTTTGGATCAGTGTCCTGAATGTGGTGATGAGCTTTCTGAAGTTGCCTGCCTGGAAGATTCACTTAGGGCTGTGAAACATAAACAGAGACAA AATCACGAGAAGTTGGTTAATGGAAAAAACATTCCCCTTTCTTTAGGGAGCAAGTATTATTTGGTCCCTTCTTCATGGTTAATGATATGGAGACATTACA TATCTGCAAGTGGCAAGAATATTTCTTCATCTCCAAAGCCTGAAGCTCTTAATATCGTGATTAATTCACTGAAGTGTGAAAAGACCGAACGGTTGACGAT AATTCCTGAGAGTGATTGGTCCGCCTTTTGTCAAGAGTGGGGTGGTGACATGGAGAAAGGCATATCTGCAATAATTGAGCCCAACAATTCTGCAGAACAG AATGTTCCTGGAAGCATTGACAATATGCTGACAACTGACGAGCACTTGGATTCTCAAGATGAGGCGATTACTGGGGCTGAGACAAAACCACCTGTTATTA AAACATTTCCCGAGGTTTGTGAGGTCTGCATAGGTGAAAAAGAAAGTTGTGAGTTGATGGAAAAACTGAACTACCTGAATGAGGAGATATATGTGTCTCT TGTACGAGGCAAGCAAGCTCCAAAATCAATTATGGAAGCCTCTGATGGTCCTTTTGAGCCAGATCGGAGGGCATCAAAACGCACTAGAAAGGGCAGCAAT GGGAATACTGTAAATTTCAAAGTTTCTGGTTTCATGTCAGTGTACCAGTTGAAGATGATGATATGGGAGTCTCTTGGGGTTGTTAAGGAGAACCAAATTC TTCATAAAGGCTCCAAGATACTTGATGAAGAGACTGCTACTTTAGCAGACCTCAACATATTTCCCGGTGATCGGCTTTGGGTGCAGGACTCTGAAATCCA CGAGCATAGGGACATTGCCGATGAGCTTGTTGACGAGAAAATGGAGGCAAGGAATGGGGAGAGAGGCTTTCGGGGAACGCTGTTGACGTCTGGTATTTCA TCACAAGTAGTTTAG
AA sequence Show only first row Show all	>Lus10029686 pacid=23152071 polypeptide=Lus10029686 locus=Lus10029686.g ID=Lus10029686.BGIv1.0 annot-version=v1.0 MDFQLPPPLHDNCWNLGRLSIEPPAFFHNRQNSSVLGKENSRMSRPTTRSKNKRHRSGENINITSEILRKVHATGELTTENVDQLYMILKPVCQGCRVNT KDNPNCFCGLIPAQSGSRKSGLWQKTTDILEALGPDPSDDLRADDSPAGLTNLGATCYANSILQFLYMNTAFRDGLFSVEPEVLKQQPVLNEIARLFARL HASKMAYIDSAPFVKTLELDNGVQQDSHEFLTLLLSLLERCLSHSSISKTKSIVQDLFRGSVSHETKCSKCSNVSEASSKMEDFYELELNVKGMKSLKDS LDDYLSVEDLDGDNQYFCSSCNMRVDATRSIKLRTLPAVLNFQLKRCIFLPKTTTKKKITSAFGFPEELDMGQRLWEPSQNDWIYNLSAVLIHKGSAVNS GHYVAHIKDENTGQWWEFDDESVSNLGHHPFGESSSRSTAENLPSKVNGGLESGSNGSHLDAQLPQPLDSDSSSNAKTFSSSDAYMLMYTLRSLRNADDK TCRISGVSSVELKGQCSSSHDDFFLPSHLSEDIQEQNALYVNACQTYQDKKEAEMLHVTERRQEVRSILSEAPVHSLGEPFYWISTDWLRHWADDFTASP LDNTSILCLHGKVPVSKLSSMKRLSAEAWAKLLSKYGGGPTLTNEDYCKACLLDGAKTLVSADSYRDRRTLMKELAADVLAGKTLDDETYYYVSKSWLHQ WIKRKNLDAPSEADAGPTVSITCPHGHLLPDQAPGAKRLLVPRNLWDFFCEDALHVKPDDPSGCIPFPFGLDQCPECGDELSEVACLEDSLRAVKHKQRQ NHEKLVNGKNIPLSLGSKYYLVPSSWLMIWRHYISASGKNISSSPKPEALNIVINSLKCEKTERLTIIPESDWSAFCQEWGGDMEKGISAIIEPNNSAEQ NVPGSIDNMLTTDEHLDSQDEAITGAETKPPVIKTFPEVCEVCIGEKESCELMEKLNYLNEEIYVSLVRGKQAPKSIMEASDGPFEPDRRASKRTRKGSN GNTVNFKVSGFMSVYQLKMMIWESLGVVKENQILHKGSKILDEETATLADLNIFPGDRLWVQDSEIHEHRDIADELVDEKMEARNGERGFRGTLLTSGIS SQVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49600		SUP32, ATUBP26,...	ubiquitin-specific protease 26...		Lus10029686 [exp]	0	1
AT3G17360		POK1	phragmoplast orienting kinesin...		Lus10017113 [exp]	6.2	0.9227
AT1G77500			Protein of unknown function (D...		Lus10042723 [exp]	9.0	0.8736
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10018608 [exp]	10.2	0.9104
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10039844 [exp]	18.0	0.8885
AT1G50240		FU	FUSED, Protein kinase family p...		Lus10013766 [exp]	18.5	0.9086
AT5G53620			unknown protein		Lus10032948 [exp]	20.4	0.8934
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Lus10016397 [exp]	25.6	0.9029
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Lus10042739 [exp]	32.4	0.8903
AT3G19050		POK2	phragmoplast orienting kinesin...		Lus10012048 [exp]	32.7	0.8924
AT5G11560			catalytics (.1)		Lus10022144 [exp]	33.7	0.8788

Compare expression of checked genes

Lus10029686 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.