Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63420 65 / 3e-14 AGG1, ATAGG1 Ggamma-subunit 1 (.1.2) AT3G22942 59 / 6e-12 AtGG2, AGG2 G-protein gamma subunit 2 (.1) AT5G18970 40 / 0.0001 AWPM-19-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042727 [exp] 162 / 4e-52 AT3G63420 70 / 3e-16 Ggamma-subunit 1 (.1.2) Lus10014714 [exp] 63 / 1e-13 AT3G63420 104 / 2e-30 Ggamma-subunit 1 (.1.2) Lus10003092 [exp] 63 / 2e-13 AT3G63420 103 / 2e-30 Ggamma-subunit 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G081500 [exp] 103 / 4e-29 AT3G63420 62 / 1e-13 Ggamma-subunit 1 (.1.2) Potri.005G179600 [exp] 103 / 4e-29 AT3G63420 81 / 3e-21 Ggamma-subunit 1 (.1.2) Potri.015G142500 [exp] 72 / 6e-17 AT3G22942 100 / 4e-29 G-protein gamma subunit 2 (.1) Potri.002G046900 [exp] 58 / 1e-11 AT3G63420 102 / 1e-29 Ggamma-subunit 1 (.1.2) Potri.005G216100 [exp] 57 / 6e-11 AT3G63420 103 / 4e-30 Ggamma-subunit 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029687 pacid=23152156 polypeptide=Lus10029687 locus=Lus10029687.g ID=Lus10029687.BGIv1.0 annot-version=v1.0 ATGGATAATGGCAATAGCAGTTTAGTGGGTGATCATGATCAGCTATTAGAAACCAGATCTTCATATGAAGATCAAGTTCAACAAGAAGAAGAAGAAGAAT CAACAATTAGTACTCGTACAGTGATGTCAAGGAGAAGCACCAATTCAATTTCTTCTTCTCCTCGCCCTACCCCCCCCACAACCCCCCCCACTCCAACGAC CAACAATGGCTACTTCGGCAAGCATCGGATGGCTGCTTCCCTCTCCATTCTTCAACTTCAAATCCAATCCACCCAGGAAGAGCTGGATCAGCTGGAAAGC ATGGGGGGCTGCTCTGCTGTCTGCACAGAATTGGTGACAAGTGTGGAATCCATCCCTGACCCTCTCCTCCCTTCGAGCAGAGGACCACCAAATGAAAGCT GGGATCGCTGGTTTCGAGGAGCCCACTACAACTCGCGTCGCAGGTGGATCTGA
AA sequence Show only first row Show all	>Lus10029687 pacid=23152156 polypeptide=Lus10029687 locus=Lus10029687.g ID=Lus10029687.BGIv1.0 annot-version=v1.0 MDNGNSSLVGDHDQLLETRSSYEDQVQQEEEEESTISTRTVMSRRSTNSISSSPRPTPPTTPPTPTTNNGYFGKHRMAASLSILQLQIQSTQEELDQLES MGGCSAVCTELVTSVESIPDPLLPSSRGPPNESWDRWFRGAHYNSRRRWI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63420		AGG1, ATAGG1	Ggamma-subunit 1 (.1.2)		Lus10029687 [exp]	0	1
AT3G15410			Leucine-rich repeat (LRR) fami...		Lus10032667 [exp]	9.6	0.7466
					Lus10005948 [exp]	10.5	0.7309
					Lus10007802 [exp]	16.4	0.7674
AT1G43900			Protein phosphatase 2C family ...		Lus10029745 [exp]	19.6	0.7292
AT2G31420	B3		Domain of unknown function (DU...		Lus10039058 [exp]	21.6	0.7439
AT2G34930			disease resistance family prot...		Lus10039523 [exp]	21.9	0.6696
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10003894 [exp]	22.3	0.7276
AT5G32450			RNA binding (RRM/RBD/RNP motif...		Lus10013651 [exp]	34.7	0.6866
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10021562 [exp]	34.8	0.6639
AT2G02400			NAD(P)-binding Rossmann-fold s...		Lus10042399 [exp]	36.0	0.6741

Compare expression of checked genes

Lus10029687 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.