Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05920 654 / 0 DHS, EDA22 embryo sac development arrest 22, deoxyhypusine synthase (.1.2) AT5G10910 392 / 1e-128 mraW methylase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042728 [exp] 733 / 0 AT5G05920 629 / 0.0 embryo sac development arrest 22, deoxyhypusine synthase (.1.2) Lus10042729 [exp] 665 / 0 AT5G10910 434 / 3e-150 mraW methylase family protein (.1) Lus10032793 [exp] 125 / 6e-34 AT5G05920 99 / 3e-26 embryo sac development arrest 22, deoxyhypusine synthase (.1.2) Lus10020239 [exp] 197 / 7e-34 AT5G05920 181 / 2e-55 embryo sac development arrest 22, deoxyhypusine synthase (.1.2) Lus10028867 [exp] 0 / 1 AT5G04850 399 / 7e-139 SNF7 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G186900 [exp] 671 / 0 AT5G05920 651 / 0.0 embryo sac development arrest 22, deoxyhypusine synthase (.1.2) Potri.005G179700 [exp] 487 / 2e-165 AT5G10910 413 / 2e-142 mraW methylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0085 [flax] [poplar] FAD_DHS PF01916 [flax] [poplar] DS Deoxyhypusine synthase CL0063 [flax] [poplar] NADP_Rossmann PF01795 [flax] [poplar] Methyltransf_5 MraW methylase family
Representative CDS sequence Show only first row Show all	>Lus10029688 pacid=23152028 polypeptide=Lus10029688 locus=Lus10029688.g ID=Lus10029688.BGIv1.0 annot-version=v1.0 ATGGAGAACCAGCTACCATCGTCAATCCACGCCACCGTGTTCAAAGAATCGGAGTCTCTAGAAGGAAAATCCCATAAGATCCAAGGCTACGACTTCAACC AAGGAGTCGATTATCCTCAGCTTCTCAAATCAATGCTCTCAACTGGCTTCCAAGCTTCCAATCTCGGCGACGCTATTTCAGTTGTTAATCAGATGTTAGA CTGGAGTCTTGCTGATGAGGCCGTTGCTGAAGATTGCAACGACGAGGAGAAAGACCCTGCTTATAGAGGGTCTGTGAGGTGCAAAATCTTCTTGGGTTTC ACTTCTAATCTGATTTCGTCCGGTGTTAGAGATACAGTTCGCTACCTCGTCCAGCATCACATGGTTGATGTGGTGGTGACTACTGCAGGTGGCATTGAGG AAGATCTTATCAAATGTCTGGCCCCAACTTACAGGGGGGCCTTCTCTCTGCCTGGATCCCAATTGCGTGCAAAGGGTTTGAATCGCATTGGCAACTTGTT AGTTCCTAATGATAACTACTGCAAATTTGAGGACTGGATTATTCCCATTTTCGACCAGATGCTGAAAGAACAAACTGAAAATAATACCCTATGGACACCA TCAAAGCTAATTGCAAGACTGGGGAAAGAGATTGACTGTGAAAGTTCATATCTTTACTGGGCCTACAAGAATGACATTCCAGTGTTCTGTCCTGGATTAA CTGATGGTTCTCTTGGGGACATGCTGTACTTTCATTCCTTCCGGAATCCAGGCTTGATTGTTGACATAGTTCAAGATATCAGAGCCATGAATGGTGAGGC TGTTCATGCCACTCCTAGAAAAACCGGGATTATTATTCTTGGAGGGGGGCTCCCTAAGCATCACATATGCAATGCAAATATGATGCGTAACGGTGCAGAT TATGCGGTTTTCATCAATACAGCGCAAGAATTCGACGGGAGCGATTCTGGAGCTCAGCCTGATGAAGCTGTTTCGTGGGGGAAAATACGAGGCTCTGCTA AAACTGTTAAGGTACATTGTGATGCAACGATCGCATTCCCCCTGCTGGTTGCCGAGACATTTGCGACAAGGCAAAATAAAGCATCAAGTGATGGAAATTT GACTCGACGGGAAGACAGTCATAGAAGCTTGGAACAGATAACGGGGATGGCGGCCGGACATATGCTGTGCCGGTGGTTTCCCATTCCGTCGCCATTAATT GCCGCGACCCGTCTTAGTATCGCCACTAAATTGTTGGCAACTACTCCTCCTATTTCGTCGTCCTCTTGCATCCGCCGAATAGATACTAGAGGCTTGGCTC CGTCCGCCACAACTGTTACTACTTCCAGTACCAGCAGCGACGACGCCAAGAAAAAGAGGAGAAAGGAGAAGGAACGGAAGAAAGCGGCGGCGGAAGCGGC GGCGAAGAACAAAAAGGAGAAGAGAAGGACTCGCTCCGATAAAGAGCACGACTCTTCGCTCGATTTCTACAGCAATTACCAAGACCATGTCCCCGTCATG CTTCGTGAAGTTATCGACGTCTTCTCTTCTTTGCCTCTTCGATCCTTCGTCGATTGTACACTTGGCGCCGCCGGCCATTCCTCCGCCATAATCAAAGCGC ATCCTGGATTGGAGCATTACATAGGCATGGATGTTGATCCTGAAGCTCACGCCAAAGCTCGAGCTCACATTGATTCTCTGTTGCTTTCTGATTCTCACTC GCACCTGAAAGCACACACGTTGGTTACGAACTTCAAACGTATTAAATCAGCCATCGGGGAGGCTGATGGAAACCTAATAGAGTCCGGAGTCAATGCAATC TTGATGGACCTTGGAATGTCGTCAATGCAGGTGAACAATCCTGAAAGAGGGTTCAGTGTTATGGCTGATGGACCTCTTGATATGCGGATGGATCCTCAGG CAAGTCTGAAAGCAGAAGACATTCTAAATTACTGGCCTGATGCAGAAGTTGGTAGGGTGCTGCGTGATTATGGAGAAGAAAGCAACTGGCGAACTCTTCA GAATAAGATTGTTCTAGCTCGTGTAAATGGTGGCATACATTCCACTGCTGAACTGATTGATCTCATTCGTGGTGTCACTCGCGGGACAAGGGGCGGAAGG CCAGGTTGGATAAAGACAGCGACTCGTGTGTTTCAAGCTCTAAGAATAGCTGTGAATGATGAGCTCAATACACTGGAAAAAGCCCTTAAGGACTGCTTTG GGTGCCTTGCACCTGGGGGAAGACTTGCTGTCATCTCGTTTCACAGTTTGGAAGACAGAATTGTCAAACAAACGTTTCTCAGCATCATTGAAACTGCTGC TGGGAGGGATTGGGGGGATACCGAGGGAGATGATGGTACCACAAGGGATTTTACAAAGACGAGTGATGACTCTGAAGCAAGAGAAACATGGATTAGACAA ATAGTACGAGGTCGAAACGGGTCGATTCTTACAAAGAGGCCGATAACACCTTCAGAAGAAGAAGAAAGATTGAATCGACGATGCAGGAGTGCCAAACTTC GGGTGATTGAGAAAGCCAGATAA
AA sequence Show only first row Show all	>Lus10029688 pacid=23152028 polypeptide=Lus10029688 locus=Lus10029688.g ID=Lus10029688.BGIv1.0 annot-version=v1.0 MENQLPSSIHATVFKESESLEGKSHKIQGYDFNQGVDYPQLLKSMLSTGFQASNLGDAISVVNQMLDWSLADEAVAEDCNDEEKDPAYRGSVRCKIFLGF TSNLISSGVRDTVRYLVQHHMVDVVVTTAGGIEEDLIKCLAPTYRGAFSLPGSQLRAKGLNRIGNLLVPNDNYCKFEDWIIPIFDQMLKEQTENNTLWTP SKLIARLGKEIDCESSYLYWAYKNDIPVFCPGLTDGSLGDMLYFHSFRNPGLIVDIVQDIRAMNGEAVHATPRKTGIIILGGGLPKHHICNANMMRNGAD YAVFINTAQEFDGSDSGAQPDEAVSWGKIRGSAKTVKVHCDATIAFPLLVAETFATRQNKASSDGNLTRREDSHRSLEQITGMAAGHMLCRWFPIPSPLI AATRLSIATKLLATTPPISSSSCIRRIDTRGLAPSATTVTTSSTSSDDAKKKRRKEKERKKAAAEAAAKNKKEKRRTRSDKEHDSSLDFYSNYQDHVPVM LREVIDVFSSLPLRSFVDCTLGAAGHSSAIIKAHPGLEHYIGMDVDPEAHAKARAHIDSLLLSDSHSHLKAHTLVTNFKRIKSAIGEADGNLIESGVNAI LMDLGMSSMQVNNPERGFSVMADGPLDMRMDPQASLKAEDILNYWPDAEVGRVLRDYGEESNWRTLQNKIVLARVNGGIHSTAELIDLIRGVTRGTRGGR PGWIKTATRVFQALRIAVNDELNTLEKALKDCFGCLAPGGRLAVISFHSLEDRIVKQTFLSIIETAAGRDWGDTEGDDGTTRDFTKTSDDSEARETWIRQ IVRGRNGSILTKRPITPSEEEERLNRRCRSAKLRVIEKAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Lus10029688 [exp]	0	1
AT5G22320			Leucine-rich repeat (LRR) fami...		Lus10013308 [exp]	6.7	0.8294
AT5G60870		RUG3	RCC1/UVR8/GEF-like 3, Regulato...		Lus10042215 [exp]	10.2	0.7641
AT2G29200		APUM1	pumilio 1 (.1)		Lus10004976 [exp]	10.4	0.8257
AT5G45780			Leucine-rich repeat protein ki...		Lus10029241 [exp]	10.5	0.7866
AT2G36070		ATTIM44-2	translocase inner membrane sub...		Lus10022930 [exp]	10.8	0.8130
AT4G32910			unknown protein		Lus10011625 [exp]	12.6	0.8104
AT3G13940			DNA binding;DNA-directed RNA p...		Lus10029818 [exp]	14.7	0.8134
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10017026 [exp]	18.4	0.7883
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10018962 [exp]	19.4	0.7371
AT4G33060			Cyclophilin-like peptidyl-prol...		Lus10024999 [exp]	20.5	0.8014

Compare expression of checked genes

Lus10029688 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.