Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34260 1023 / 0 AXY8, FUC95A ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026594 [exp] 1160 / 0 AT4G34260 1100 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10013884 [exp] 1142 / 0 AT4G34260 1023 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10020979 [exp] 991 / 0 AT4G34260 995 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10026595 [exp] 624 / 0 AT4G34260 570 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Lus10013883 [exp] 163 / 6e-45 AT4G34260 146 / 1e-39 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G299000 [exp] 1145 / 0 AT4G34260 1104 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Potri.009G093900 [exp] 1130 / 0 AT4G34260 1133 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Potri.009G093500 [exp] 1032 / 0 AT4G34260 1030 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Potri.001G298900 [exp] 1021 / 0 AT4G34260 991 / 0.0 ALTERED XYLOGLUCAN 8, 1,2-alpha-L-fucosidases (.1) Potri.009G093600 [exp] 47 / 1e-06 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029689 pacid=23151961 polypeptide=Lus10029689 locus=Lus10029689.g ID=Lus10029689.BGIv1.0 annot-version=v1.0 ATGGAGAATCCCCCCTCAGTCACAGACACTCCTTCCGATCCCTTGAAGTTGAATTTCTCTGCTCCGGCCGACTACTGGACCGACGCCATTCCCATCGGAA ATGGCCGCCTTGGTGCCATGGTCTGGGGCTCCGTTCCCAACGAAACTCTCCAACTTAACGATGATACCCTATGGACCGGTGTTCCTGGAGACTACACTGA CCCAAATGCTCCGTCGGCTTTATCGGAGGTTAGAAAACTTGTTGCTGACGGCCAATTCCCTGAAGCCAGTGTCGAAGCCCTTAAATTGTCCGGAAAAAGT TCTGAGGTCTATCAAGCGCTTGGAGACATCGTTCTGGAATTCGATGCTTCGCATCAGAACTACAATCCAGAAACATACCAAAGGGAGCTGGATTTGGATA CTGCAATCGCAACGGTGAGTTACTCGGTTGGGGATGTTGACTACACAAGGGAGCATTTTGCTTCCAGTTCTGATCAGGCAATCGTTTCAAGGATCTCATC AAGCAAACCAGGTGCTCTATCCTTCACTCTTTACCTGGACAGCAAGATGGAACACACGTCATATGTCGAGGGACAGAACCAGATTGTACTCCAAGGAAGT TGCAGAGGGAACCCTAAGGGAATTCAATTCACTGCGATGCTGGACTTACAGGTTGGCGGAAAAGCAGCAGTAGTAAGTAGTTTCGACAATGGGAAAAAGC TCAAGGTTGATGGTGGGGATTGGACAAGTTTTCTTCTCGTGGCTTCGTCTTCGTTCGATGGGCCTTTCACTAGTCCTGTTGATTCCACCAAGGATGCTTC ATCAGATTGCCGAAAGGCATTGAGTTCGCTGCCGAATTGGTCATATGCTGATCTACGAGCACGGCATTTGGAGGATTATCAGAGCTTGTTCCACCGTGTT TCGCTGCAGCTCTCCAAAGGGTCCGGTAACATTTTGCGGAAGAACCATGTCGTCTCGACTGCAGAGAGGGTGAAGTCATTCCAACTCGATGAGGATCCGT CTCTGGTGGAGCTTCTGTTCCACTATGGTCGGTATTTACTGATATCTTGTTCGAGGCCGGGAACCCAGGTGGCTAACTTGCAGGGCATATGGAGCAAAGA TCTGTCGCCTCCGTGGGATGGAGCTCAACACCTAAACATCAATCTACAGATGAACTACTGGCCAGCTCTTCCATGCAATCTTGAGGAGTGTCAAGAGCCA CTGTTTGACTACATTTCTTCCCTGTCTATCAGTGGAAGTAAAACTTCTAAAGTGAACTACGGCGCTAATGGCTGGGTTGCTCATTCGATAAGTGACTTGT GGGCAAAGTCATCGGCAGACAGTGGAAACGCCGTGTGGGCTTGCTGGCCGATGGGTGGTGCTTGGCTTTGTACACATCTATGGGAACATTTTAGTTACAC GATGGACAAAGAGTTCCTGCAAAACAAAGCATATCCACTGTTGGAAGGCTGCACGAAATTTTTGTTGGACTGGTTAATAGAAGGGCCTGGAGGAAGTTTG GGAACTAACCCATCAACGTCCCCGGAGCATATGTTCATAGCTCCTAATGGGGAGCAAGCTTGTGTGAGCTACTCGTCAACAATGGACATGTCAATCACAA GACAAGTGTTCTCTGACATTGTTGCAGCTGCTGAGATTTTGGGAAGAAAGGACGATGAACTCATTGTAAAGGTCATTGATGCTCTCCCTAAGCTATTGCC ATATAAAATTGCTAAAGATGGTACCGTAATGGAATGGGCTTTGGATTTCAAAGACCCGGAGCCTCAGCATAGGCATCTTTCTCATCTCTTTGGCCTCTTC CCTGGCCATAGCATTACTCTCGATGACAATCCAGAACTCTGTAAAGCTGCAGAAAACACAATCAACAAGAGGGGTGTGGAAGGGCCCGGCTGGTCAACTG TGTGGAAAGCTGCACTGTGGGCACGTCTGCATAAACACGAGGAGGCATACCGAATGATAAAGCATTTGTTCATCCTCGTGGATCCTTCTCACGAAAGTAA TTTCGAAGGAGGACTTTACAGCAACCTTTTCACCGCTCACCCTCCGTTTCAGATTGATGCCAACTTTGGATTCTCGGCAGCAATCGCAGAGATGCTAGTT CAGAGTACTGGAAAGGACCTGCACTTGCTCCCTGCTCTTCCTCGGGACAAGTGGCGTAATGGCTGTTTCAAAGGACTGAAGGCTCGAGGAGGTTTGACAG TAAACCTGTGCTGGGATAAAGGTGATCTTAATGAATTGAATCTTTGGTCAATAAAAGGGAAAACTGTCCGATTACATTACAGGGGAAGGACGGTGAGTGC AGACGTGCTGCCTGGTAATGTTTACACATTTGATATGGGGTTGAGATGCATACGCACACATTCCCTCGCATGA
AA sequence Show only first row Show all	>Lus10029689 pacid=23151961 polypeptide=Lus10029689 locus=Lus10029689.g ID=Lus10029689.BGIv1.0 annot-version=v1.0 MENPPSVTDTPSDPLKLNFSAPADYWTDAIPIGNGRLGAMVWGSVPNETLQLNDDTLWTGVPGDYTDPNAPSALSEVRKLVADGQFPEASVEALKLSGKS SEVYQALGDIVLEFDASHQNYNPETYQRELDLDTAIATVSYSVGDVDYTREHFASSSDQAIVSRISSSKPGALSFTLYLDSKMEHTSYVEGQNQIVLQGS CRGNPKGIQFTAMLDLQVGGKAAVVSSFDNGKKLKVDGGDWTSFLLVASSSFDGPFTSPVDSTKDASSDCRKALSSLPNWSYADLRARHLEDYQSLFHRV SLQLSKGSGNILRKNHVVSTAERVKSFQLDEDPSLVELLFHYGRYLLISCSRPGTQVANLQGIWSKDLSPPWDGAQHLNINLQMNYWPALPCNLEECQEP LFDYISSLSISGSKTSKVNYGANGWVAHSISDLWAKSSADSGNAVWACWPMGGAWLCTHLWEHFSYTMDKEFLQNKAYPLLEGCTKFLLDWLIEGPGGSL GTNPSTSPEHMFIAPNGEQACVSYSSTMDMSITRQVFSDIVAAAEILGRKDDELIVKVIDALPKLLPYKIAKDGTVMEWALDFKDPEPQHRHLSHLFGLF PGHSITLDDNPELCKAAENTINKRGVEGPGWSTVWKAALWARLHKHEEAYRMIKHLFILVDPSHESNFEGGLYSNLFTAHPPFQIDANFGFSAAIAEMLV QSTGKDLHLLPALPRDKWRNGCFKGLKARGGLTVNLCWDKGDLNELNLWSIKGKTVRLHYRGRTVSADVLPGNVYTFDMGLRCIRTHSLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10029689 [exp]	0	1
AT5G46630			Clathrin adaptor complexes med...		Lus10040086 [exp]	2.4	0.8199
AT4G34660			SH3 domain-containing protein ...		Lus10017501 [exp]	3.0	0.7822
AT1G08370		DCP1, ATDCP1	decapping 1 (.1)		Lus10034186 [exp]	3.2	0.7665
AT5G13560			unknown protein		Lus10040337 [exp]	5.7	0.7307
AT1G12470			zinc ion binding (.1)		Lus10031618 [exp]	6.9	0.7305
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Lus10034151 [exp]	7.6	0.7914
AT2G17200		DSK2	ubiquitin family protein (.1)		Lus10023934 [exp]	8.7	0.7813
AT1G79940		ATERDJ2A	DnaJ / Sec63 Brl domains-conta...		Lus10039293 [exp]	15.9	0.7315
AT2G38020		EMB258, MAN, VC...	VACUOLELESS 1, MANGLED, vacuol...		Lus10012203 [exp]	21.6	0.7252
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10005450 [exp]	21.7	0.7355

Compare expression of checked genes

Lus10029689 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.