Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77460 181 / 3e-53 Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.1), Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.2) AT2G22125 135 / 5e-37 POM2, CSI1 POM-POM 2, cellulose synthase-interactive protein 1, binding (.1) AT1G44120 132 / 5e-36 Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.1) AT1G70810 46 / 1e-06 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G17980 40 / 0.0002 AtC2 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042730 [exp] 160 / 1e-45 AT1G77460 2385 / 0.0 Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.1), Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.2) Lus10019679 [exp] 129 / 1e-34 AT2G22125 3364 / 0.0 POM-POM 2, cellulose synthase-interactive protein 1, binding (.1) Lus10018144 [exp] 43 / 5e-05 AT1G77470 564 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10025689 [exp] 43 / 6e-05 AT1G77470 568 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10026515 [exp] 40 / 0.0005 AT5G04220 615 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G180100 [exp] 180 / 2e-52 AT1G77460 2772 / 0.0 Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.1), Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.2) Potri.005G080100 [exp] 129 / 8e-35 AT2G22125 3215 / 0.0 POM-POM 2, cellulose synthase-interactive protein 1, binding (.1) Potri.007G087200 [exp] 127 / 5e-34 AT2G22125 3229 / 0.0 POM-POM 2, cellulose synthase-interactive protein 1, binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10029690 pacid=23152053 polypeptide=Lus10029690 locus=Lus10029690.g ID=Lus10029690.BGIv1.0 annot-version=v1.0 ATGCCAGTTGACATAGCGAAGTCTCAGGCAATGATTGCTGCTGAAGCAGTTTCCGTTCTACAAAACCTGTCAAAAGCATGTCCACCTGGTACCCCTGACA GAGCAGACGCCCTGTTGCGCTGTTTACCTGGATGTTTAACCGTCACCATTAAGCGTGGAAACAACCTGAAGCAGGCTAATGCTTTTTGTCAATTGACGAT CGGCAACAGTCCACAACGACAAACTAAGGTGATAAGCAATACTAACTCTCCGGAGTGGAATGAATCGTTTACGTGGGCATTCGATATAGCGCCTAGGGGA CAGCAACTCAATATTGTATGCAAAAGCAAAAGTACATTTGGGAAGCGGCAGCAAGACGAGCTCCGGCGAAAGAAGCAGAAAATGAGCATTCTACACATAA AGCATTCTACACAAGAGCATAAAGGCCAAACTGATGAGCAGAACACATACTCTATGTCAGACATATCGTTGATCAACTTCACCCGTACATCTGATGGCAT CTTAATCCTGAAAACAAACCTGTCAGAAGAAAGGGGTTGA
AA sequence Show only first row Show all	>Lus10029690 pacid=23152053 polypeptide=Lus10029690 locus=Lus10029690.g ID=Lus10029690.BGIv1.0 annot-version=v1.0 MPVDIAKSQAMIAAEAVSVLQNLSKACPPGTPDRADALLRCLPGCLTVTIKRGNNLKQANAFCQLTIGNSPQRQTKVISNTNSPEWNESFTWAFDIAPRG QQLNIVCKSKSTFGKRQQDELRRKKQKMSILHIKHSTQEHKGQTDEQNTYSMSDISLINFTRTSDGILILKTNLSEERG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77460			Armadillo/beta-catenin-like re...		Lus10029690 [exp]	0	1
AT4G33920			Protein phosphatase 2C family ...		Lus10000700 [exp]	3.6	0.9905
AT5G59380		MBD6, ATMBD6	methyl-CPG-binding domain 6 (....		Lus10029564 [exp]	3.7	0.9707
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10025981 [exp]	5.1	0.9905
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10006277 [exp]	6.2	0.9905
AT5G51740			Peptidase family M48 family pr...		Lus10032437 [exp]	7.2	0.9905
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Lus10038371 [exp]	8.1	0.9905
AT1G01450			Protein kinase superfamily pro...		Lus10041113 [exp]	8.8	0.9905
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10004882 [exp]	9.5	0.9905
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Lus10016711 [exp]	10.2	0.9905
AT1G53200			unknown protein		Lus10011648 [exp]	10.4	0.8062

Compare expression of checked genes

Lus10029690 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.