Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77460 266 / 2e-81 Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.1), Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.2) AT2G22125 212 / 2e-62 POM2, CSI1 POM-POM 2, cellulose synthase-interactive protein 1, binding (.1) AT1G44120 202 / 3e-59 Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042730 [exp] 397 / 7e-127 AT1G77460 2385 / 0.0 Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.1), Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.2) Lus10019679 [exp] 176 / 5e-50 AT2G22125 3364 / 0.0 POM-POM 2, cellulose synthase-interactive protein 1, binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G180100 [exp] 325 / 9e-102 AT1G77460 2772 / 0.0 Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.1), Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.2) Potri.007G087200 [exp] 215 / 1e-63 AT2G22125 3229 / 0.0 POM-POM 2, cellulose synthase-interactive protein 1, binding (.1) Potri.005G080100 [exp] 207 / 6e-61 AT2G22125 3215 / 0.0 POM-POM 2, cellulose synthase-interactive protein 1, binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029691 pacid=23151952 polypeptide=Lus10029691 locus=Lus10029691.g ID=Lus10029691.BGIv1.0 annot-version=v1.0 ATGGTAAATTTGATAACAGAAGGGCTTATTTACCTTGATGTTTTGGTGTCCATGACTGCGATGACTTCTGGAATAAGGAAACTGTATTCATTTGGCTTCC AAACTGTTGCTAGGACACTAAGACTCACACCAAGCCAAACTATTGAACCTTTGATTCCGTTCCTGGAATCACCAACACGAGAGCTACAACACGTTGGAAC GGAGGTGCTTTCTCATCTTCTAGCACAGGAACACTTCCAGCAAGATATCACGACAAAGGATGCAGTGGTCCCACTTGTCAGGCTTACAGGAATCAGAATT TTGACCCTTCAGGAGACGGCAGTAAGCGCGTTAGAGAAAATTACAAGCACCTGGCCAAAGGAAGTTGCAGATGCTGGCGGAATTTTCGAGCTTTCGAAGA TCATCATCCAAGATGATCCCGAACCATCTCTTGAGCTCTGGGAAGCTGCAGCTCTGATCCTGTCGAATCTTCTACGTTTCAATACCGAGTACTACTACAA ATTTTCTCTTCAGGTTCTTGTTCGGATGTTGCAGTCTACTGTTGAGAGCACAATCCAAGTTTCACTTGACGCTTTGCTCGTGCATGAACGAGCTGATAAA TCAAATGCGGAGCAAATGACAGAGGCTGGCGTCGTAGATGCTTTGCTGGATCTGCTAAGGTCTCATCACTGTGAAGAGATGTCTGGGAGGTTACTTGAAG CTCTGTTCAACAAGGTTAAAGTCCGTGAGATGAAGATCTCCAAGAGCCAGCGCGGCAAGGAGCTTGCAAGTCTCGGACGAGGTTTGCGGGTCCAATAG
AA sequence Show only first row Show all	>Lus10029691 pacid=23151952 polypeptide=Lus10029691 locus=Lus10029691.g ID=Lus10029691.BGIv1.0 annot-version=v1.0 MVNLITEGLIYLDVLVSMTAMTSGIRKLYSFGFQTVARTLRLTPSQTIEPLIPFLESPTRELQHVGTEVLSHLLAQEHFQQDITTKDAVVPLVRLTGIRI LTLQETAVSALEKITSTWPKEVADAGGIFELSKIIIQDDPEPSLELWEAAALILSNLLRFNTEYYYKFSLQVLVRMLQSTVESTIQVSLDALLVHERADK SNAEQMTEAGVVDALLDLLRSHHCEEMSGRLLEALFNKVKVREMKISKSQRGKELASLGRGLRVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77460			Armadillo/beta-catenin-like re...		Lus10029691 [exp]	0	1
AT4G36470			S-adenosyl-L-methionine-depend...		Lus10041380 [exp]	5.5	0.7106
AT3G44670			Disease resistance protein (TI...		Lus10015465 [exp]	7.2	0.7345
AT1G11340			S-locus lectin protein kinase ...		Lus10013247 [exp]	12.6	0.6841
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10033595 [exp]	19.4	0.6715
AT3G09730			unknown protein		Lus10023175 [exp]	21.2	0.6853
AT1G05170			Galactosyltransferase family p...		Lus10001148 [exp]	22.6	0.7023
AT1G13810			Restriction endonuclease, type...		Lus10033589 [exp]	26.2	0.6896
AT3G50120			Plant protein of unknown funct...		Lus10019324 [exp]	26.6	0.7007
AT2G03380			Pentatricopeptide repeat (PPR)...		Lus10026641 [exp]	34.4	0.6882
					Lus10022865 [exp]	35.4	0.6619

Compare expression of checked genes

Lus10029691 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.