Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47180 94 / 4e-23 RING/U-box superfamily protein (.1) AT3G19910 87 / 6e-20 RING/U-box superfamily protein (.1) AT3G63530 74 / 2e-15 BB2, BB BIG BROTHER, RING/U-box superfamily protein (.1.2) AT5G67120 73 / 4e-15 RING/U-box superfamily protein (.1) AT3G15070 72 / 2e-14 RING/U-box superfamily protein (.1.2) AT1G73760 69 / 1e-13 RING/U-box superfamily protein (.1) AT2G15530 69 / 5e-13 RING/U-box superfamily protein (.1.2.3.4) AT4G34040 67 / 2e-12 RING/U-box superfamily protein (.1) AT5G52140 64 / 6e-12 RING/U-box superfamily protein (.1) AT2G37150 63 / 3e-11 RING/U-box superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018140 [exp] 112 / 3e-30 AT3G19910 104 / 2e-26 RING/U-box superfamily protein (.1) Lus10025691 [exp] 110 / 3e-29 AT3G19910 107 / 2e-27 RING/U-box superfamily protein (.1) Lus10019703 [exp] 80 / 1e-17 AT3G63530 285 / 1e-97 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10016416 [exp] 80 / 1e-17 AT3G63530 287 / 2e-98 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10010182 [exp] 81 / 3e-17 AT3G19910 298 / 2e-99 RING/U-box superfamily protein (.1) Lus10017385 [exp] 80 / 5e-17 AT3G19910 297 / 4e-99 RING/U-box superfamily protein (.1) Lus10031275 [exp] 75 / 6e-16 AT3G63530 174 / 4e-54 BIG BROTHER, RING/U-box superfamily protein (.1.2) Lus10040389 [exp] 74 / 1e-14 AT2G37150 191 / 1e-53 RING/U-box superfamily protein (.1.2.3) Lus10002554 [exp] 69 / 3e-14 AT3G63530 122 / 1e-34 BIG BROTHER, RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G180300 [exp] 112 / 3e-30 AT3G47180 117 / 1e-32 RING/U-box superfamily protein (.1) Potri.002G080900 [exp] 111 / 6e-30 AT3G47180 117 / 7e-33 RING/U-box superfamily protein (.1) Potri.003G204500 [exp] 83 / 9e-19 AT3G63530 175 / 2e-54 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.005G090800 [exp] 84 / 1e-18 AT3G19910 187 / 5e-57 RING/U-box superfamily protein (.1) Potri.007G073200 [exp] 80 / 3e-17 AT3G19910 303 / 3e-102 RING/U-box superfamily protein (.1) Potri.001G267700 [exp] 77 / 1e-16 AT3G63530 301 / 4e-104 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.001G019600 [exp] 77 / 1e-16 AT3G63530 176 / 1e-54 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.009G062100 [exp] 77 / 1e-16 AT3G63530 269 / 4e-91 BIG BROTHER, RING/U-box superfamily protein (.1.2) Potri.011G097100 [exp] 70 / 1e-13 AT1G53190 372 / 2e-123 RING/U-box superfamily protein (.1.2) Potri.001G373700 [exp] 70 / 2e-13 AT1G53190 354 / 1e-116 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10029693 pacid=23152059 polypeptide=Lus10029693 locus=Lus10029693.g ID=Lus10029693.BGIv1.0 annot-version=v1.0 ATGGACAACAACGGCAAACAACCCACGTCGTCGTCGACCAACAACCGCCAACAACAAGACCATGAATCATTACGTGTGGACGTACATGCAGACGTGGCTA CTACCGCCGCAATAACCACACCTAGTTACGACGACGACGTATCATCGAGCGAAGAAGAAGAAGAGGATTGGAGCGAAGACAGCGACGGGTACGGTAACGA CTACGAGTACTTCGACATCATTGAGGAAGCTGATGAGTTTCTTGAGGAAGGGCAAGGCAGCAACAGTGAAGACTACGACGATGACGAAATGGAGGAGGAG GAGGGGGAGGATGAAATAGACCCGGACGACATGTCGTACGAGGAGCTGCTTGCACTGGGAGACTTGATCGGCCGAGAGAAGCGTGGGCTATCGTTGGATC AAATATCGGCGCCTGGCTGTCTACGGCCGAGGAGGAAGCTTCTGGAATATATGAGGATGTCGGGTGATGATGAGGTGGATCGGTGTGTGATTTGTCAGGT TGAGTACGAGCAGGATGATCATCAGGATGCGGTGTGGGAGATTGTTGGATGCGGGCATCCTTACCATAAGGACTGTATTACGGATTGGCTGATGGTTAAG AAGAGCTGCCCCATATGTGGATACGAGGTGTCTCCTAATTCTTCTTCATCTTCTTCTTCTTCTTCATCATCATCATCTTTTGCGTCGGCCAATGTTAAGA ATAGTGATGGTGCGACTGGTTACAATGGTAATTGTGCTGACGGCGGTGATGGCAATTAA
AA sequence Show only first row Show all	>Lus10029693 pacid=23152059 polypeptide=Lus10029693 locus=Lus10029693.g ID=Lus10029693.BGIv1.0 annot-version=v1.0 MDNNGKQPTSSSTNNRQQQDHESLRVDVHADVATTAAITTPSYDDDVSSSEEEEEDWSEDSDGYGNDYEYFDIIEEADEFLEEGQGSNSEDYDDDEMEEE EGEDEIDPDDMSYEELLALGDLIGREKRGLSLDQISAPGCLRPRRKLLEYMRMSGDDEVDRCVICQVEYEQDDHQDAVWEIVGCGHPYHKDCITDWLMVK KSCPICGYEVSPNSSSSSSSSSSSSSFASANVKNSDGATGYNGNCADGGDGN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19910			RING/U-box superfamily protein...		Lus10029693 [exp]	0	1
AT2G15680		AtCML30	calmodulin-like 30, Calcium-bi...		Lus10014050 [exp]	1.4	0.9576
AT1G69880		ATH8	thioredoxin H-type 8 (.1)		Lus10037225 [exp]	2.0	0.9600
AT3G51030		ATTRX1, ATTRXH1	ARABIDOPSIS THALIANA THIOREDOX...		Lus10028349 [exp]	2.4	0.9499
					Lus10038232 [exp]	4.2	0.9550
AT2G36650			unknown protein		Lus10023883 [exp]	6.3	0.9495
					Lus10016944 [exp]	6.6	0.9518
AT4G16400			unknown protein		Lus10039068 [exp]	6.9	0.9403
AT4G05430			Carbohydrate-binding X8 domain...		Lus10038529 [exp]	7.7	0.9390
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10020190 [exp]	7.7	0.9510
AT5G42750		BKI1	BRI1 kinase inhibitor 1 (.1)		Lus10021736 [exp]	8.7	0.9148

Compare expression of checked genes

Lus10029693 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.