Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15170 515 / 0 MATE efflux family protein (.1) AT1G71140 500 / 8e-175 MATE efflux family protein (.1) AT1G15150 499 / 2e-174 MATE efflux family protein (.1) AT1G15180 495 / 7e-173 MATE efflux family protein (.1.2) AT1G15160 491 / 2e-171 MATE efflux family protein (.1) AT2G04100 440 / 2e-151 MATE efflux family protein (.1) AT2G04070 440 / 2e-151 MATE efflux family protein (.1) AT2G04080 434 / 7e-149 MATE efflux family protein (.1) AT2G04050 433 / 1e-148 MATE efflux family protein (.1) AT2G04040 432 / 4e-148 ATDTX1 detoxification 1, MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042732 [exp] 884 / 0 AT1G15170 562 / 0.0 MATE efflux family protein (.1) Lus10018136 [exp] 739 / 0 AT1G71140 571 / 0.0 MATE efflux family protein (.1) Lus10018135 [exp] 681 / 0 AT1G15170 524 / 0.0 MATE efflux family protein (.1) Lus10018134 [exp] 632 / 0 AT1G15170 542 / 0.0 MATE efflux family protein (.1) Lus10028540 [exp] 628 / 0 AT1G15170 537 / 0.0 MATE efflux family protein (.1) Lus10004899 [exp] 530 / 0 AT1G15170 474 / 2e-166 MATE efflux family protein (.1) Lus10000619 [exp] 486 / 1e-168 AT1G71140 528 / 0.0 MATE efflux family protein (.1) Lus10009132 [exp] 483 / 8e-168 AT2G04040 489 / 9e-171 detoxification 1, MATE efflux family protein (.1) Lus10009140 [exp] 468 / 3e-162 AT1G64820 560 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G116900 [exp] 626 / 0 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.008G126500 [exp] 589 / 0 AT1G15170 546 / 0.0 MATE efflux family protein (.1) Potri.010G117000 [exp] 578 / 0 AT1G15170 545 / 0.0 MATE efflux family protein (.1) Potri.004G094900 [exp] 496 / 3e-173 AT1G71140 503 / 3e-176 MATE efflux family protein (.1) Potri.004G093400 [exp] 487 / 1e-169 AT1G71140 482 / 8e-168 MATE efflux family protein (.1) Potri.017G120600 [exp] 476 / 2e-165 AT1G66760 468 / 2e-162 MATE efflux family protein (.1.2) Potri.004G094800 [exp] 474 / 4e-165 AT2G04100 479 / 2e-167 MATE efflux family protein (.1) Potri.017G120400 [exp] 473 / 4e-164 AT2G04100 508 / 3e-178 MATE efflux family protein (.1) Potri.004G094700 [exp] 465 / 4e-161 AT2G04100 425 / 3e-145 MATE efflux family protein (.1) Potri.017G120500 [exp] 464 / 8e-161 AT2G04100 468 / 3e-162 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10029694 pacid=23151988 polypeptide=Lus10029694 locus=Lus10029694.g ID=Lus10029694.BGIv1.0 annot-version=v1.0 ATGGGATTCCTTAACGACAACGCGATGGACCAGAGACTGCTTTCTCCGCCCCCAAAATCACGATCCCACGGGGGCGGCGAGTTGACGTGGAGGGTATTTG TCGACGAGGTGAAGCGGCTTGGTTACATAGCCGGACCTATGGTCGCCATCAATCTGTCTCAGTACCTCCTCCAAGTCATATCGTTGATGATGGTCGGACA TTTAGGAGAACTCCAACTCTCTAGCACCGCCATGGCCGTTTCTCTTGCAAGCGTCACTGGTTTCAGCGTCATCTTAGGGATGTCGAGTGCACTGGAAACT CTGTGCGGGCAAGCATTTGGAGCTGGTCAATATCGGATAGTTGGAACCCTAACTTACACCGCCATCTTCTGCTTACTGCTGGTGTGTATTCCCCTGTCAA TCCTCTGGATCTACATGGAGAAGATACTTGTGTTCGTCGGCCAAGATCCCACCATCTCCCACGAGGCCGGAATTTTCCAGATGTGGCTCATTCCTTGTCT CTTCGCTTACGCAATGGCTCAACCGCTAGTTCGATATCTCCAAGCACAGAGTCTGATCGAACCGATGCTTGTAACTGCTGTCATTACGCTTTGCTTCCAC GTCCCGGTCTGCTGGGCTTTAGTGTTCAGGACCAGACTGCAGAACGTGGGAGCCGCATTGGCAATGTGCTTGTCGAATTGGTTGAGCTTCGCTACCCTTG CACTGTATGTGAAGTTCTCCCCTTCCTGTGCCAGGACTATGGTCCCGATTTCCACCGACTTGTTCCATGGCATTGGCGAGTTCTTCCGCTATGCCATCCC TTCAGCAGTCATGATCTGCCTGGAATGGTGGTCGTTTGAGCTTCTCGTTCTGCTTTCCGGTCTGTTGCCTAATCCTGCTCTTGAAACATCTGTCCTGTCA GTCTGCCTAACAACCATCGCAACTTTTTACTCGATACCATATGGACTCGGTGCTGCAGCCAGCACTAGAGTCTCGAACGAACTAGGCAGGGGTAAACCAG AGCTGGCACGTATATCGGTGCTTTCAGTGATGTCGATTGGAGTAGCTGAGGCTCTCCTGGTAAGCATATCGCTATATGCAGCACGCCATGCCTTTGGTTA CAGCTTCAGCAATGAAAAGGAAGTTATAGAGTATGTGACAAGGATGGCTCCTCTGATTTGCTTGTCAGTTATAATGGACAGTTTGCAAGGGGTTCTCTCA GGAATTGCAAGGGGATGCGGATGGCAGCATATAGGAGCCTATATCAACCTTGGAGCCTTCTATTTGTGTGGTATTCCAGTTGGAGTTGCATTGGGTTTCT GGACTGACCTAAGAGGAAAGGGGCTTTGGATTGGCGTCCAAGTTGGTGCATTTACACAGACATTGCTTCTGTTCCTTGTTACACTATGCACTAACTGGGA AAAACAGGCGAGTGATGCTAGGCAGAGGATATCAAAAGGAGAATCAACCGTTACGAATGCATTGATTTGA
AA sequence Show only first row Show all	>Lus10029694 pacid=23151988 polypeptide=Lus10029694 locus=Lus10029694.g ID=Lus10029694.BGIv1.0 annot-version=v1.0 MGFLNDNAMDQRLLSPPPKSRSHGGGELTWRVFVDEVKRLGYIAGPMVAINLSQYLLQVISLMMVGHLGELQLSSTAMAVSLASVTGFSVILGMSSALET LCGQAFGAGQYRIVGTLTYTAIFCLLLVCIPLSILWIYMEKILVFVGQDPTISHEAGIFQMWLIPCLFAYAMAQPLVRYLQAQSLIEPMLVTAVITLCFH VPVCWALVFRTRLQNVGAALAMCLSNWLSFATLALYVKFSPSCARTMVPISTDLFHGIGEFFRYAIPSAVMICLEWWSFELLVLLSGLLPNPALETSVLS VCLTTIATFYSIPYGLGAAASTRVSNELGRGKPELARISVLSVMSIGVAEALLVSISLYAARHAFGYSFSNEKEVIEYVTRMAPLICLSVIMDSLQGVLS GIARGCGWQHIGAYINLGAFYLCGIPVGVALGFWTDLRGKGLWIGVQVGAFTQTLLLFLVTLCTNWEKQASDARQRISKGESTVTNALI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15170			MATE efflux family protein (.1...		Lus10029694 [exp]	0	1
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10026009 [exp]	1.7	0.9374
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10026418 [exp]	4.0	0.9316
AT5G26620			unknown protein		Lus10001512 [exp]	5.8	0.8920
AT3G19550			unknown protein		Lus10013900 [exp]	7.1	0.9180
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10004377 [exp]	8.4	0.8967
					Lus10033284 [exp]	8.9	0.9158
AT2G16630			Pollen Ole e 1 allergen and ex...		Lus10042394 [exp]	9.2	0.9090
AT1G31740		BGAL15	beta-galactosidase 15 (.1)		Lus10043422 [exp]	9.5	0.8964
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10041752 [exp]	10.2	0.8998
AT5G46090			Protein of unknown function (D...		Lus10018635 [exp]	11.4	0.9129

Compare expression of checked genes

Lus10029694 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.