Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77405 591 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22670 132 / 1e-33 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 129 / 3e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G46100 126 / 1e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 124 / 2e-30 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 123 / 3e-30 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G12775 122 / 1e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12700 122 / 1e-29 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT2G02150 120 / 4e-29 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G64320 120 / 6e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042736 [exp] 852 / 0 AT1G77405 610 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004533 [exp] 129 / 4e-32 AT2G06000 517 / 4e-180 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Lus10004615 [exp] 125 / 8e-31 AT2G06000 531 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Lus10011566 [exp] 122 / 1e-29 AT5G65820 826 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003424 [exp] 121 / 3e-29 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10016729 [exp] 119 / 3e-29 AT5G39710 243 / 4e-73 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027267 [exp] 120 / 4e-29 AT1G74580 813 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009201 [exp] 116 / 7e-29 AT1G12700 274 / 3e-86 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014244 [exp] 119 / 1e-28 AT1G12700 397 / 7e-130 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G080300 [exp] 645 / 0 AT1G77405 616 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 130 / 2e-32 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G181900 [exp] 125 / 4e-31 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271200 [exp] 125 / 4e-31 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G098400 [exp] 125 / 1e-30 AT2G02150 924 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G070200 [exp] 122 / 3e-30 AT1G74900 590 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050500 [exp] 122 / 9e-30 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 121 / 1e-29 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G271400 [exp] 121 / 2e-29 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G245400 [exp] 120 / 2e-29 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10029697 pacid=23151972 polypeptide=Lus10029697 locus=Lus10029697.g ID=Lus10029697.BGIv1.0 annot-version=v1.0 ATGACGATACTCCAACCTCCGACGACCCGCAGTCGCACTTCCACTGTAATGAATCAGATTGTCTCCGTCATGCTTCAAGCTCGCCCATTCGATGCCAATC TCACTTCATCCACCACCTCCGCCGCTCTCGTCACCGCTGATTTGGTTTCCGATGTCCTCCGCTCAATACCAAGATTCTTCTTCCTTTCCCCACGCTCCAT CGGCCGCCAGAACACCACCCGCCACCGCTCTCCGATCAAGCAACGCAATCTCGAGGTGGAACATTGCAAGCGCCGGGACGGATCCCTCGTTCTCGGCCCC GGAGCTTACAGGGATCCAAGGAGAGTATGTTTGGGAGTGAACAAGGCGTTGGATTTCTTCACTTGGCTGGAGACGGATTTAGGGTTCCAGCACACCGAAT CCACATGTCGAGACATGGCCGTTGTGTTGGTAAGAGGGAATAAATTGGATTTGCTATGGGAATTTCTCAGAGAAATGTCCGGTAGAGGAAACGGTGGTGG TTTAAGTCTTGTTACAACAATGACCGTAACCTGTTTGATGAAAGTCCTAGGAGAAGAAGGGTTGGTGAAACAAGCATTGGCGTTGTTTTATCGGATGAAG AAGTATCACTGCAAGCCTGATGTTTATGCGTATAACACGATCATTTACGCTCTATGCAGAGTCGGGAATTTTAAAAAGGCCAGAGATTTGTTACAACAGA TGGAGCTTCCTGGGTTCAGATGTCCTCCCGATACGTTTACTTACACTATATTGATTAGCTGTTACTGTAAGTACAGTTTGCAAACTGGGTGTAGAAAGGC GATAAGGAGGAGGTTATGGGAAGCCAACCACTTGTTTAGGCTGATGCTCTTCAACGGGTTCGTCCCCGATCTCGTTACTTACAATTGTTTGATTGATGGA TGCTGCAAGACGAACAGAATTGGGAGGGCCACAGAGCTCTTTCAAGATATGAGTAAAAGAGGGTGTGTCCCGAACCGGGTTACTTATGATTCTTTCATTA GATACTACAGTGTGGTGAATGAGGTTGAGAAAGCCGTCGAGATGTTGAGGATGATGCAGAAGATGAATCATGGGGTGCCGAGTTCGAGTTCCTATACGCC GATTATACATGCGCTTTGTGAAAGTGGGAGAGCTTTGGAAGCTTGGGAGTTCCTTGTTGAGCTGGTAAATGGGGGATCAATACCTAGGGAGTATACTTAT AAGCTGGTTTGTGAAGCATTGAGGTCGGGTGGAGAGGATGGCTTGGTGAATGATGAGTTGCATGATATGATTAGAGAAGGTATAGATAACAGATTTAGGG ATGTGAAGAAGGTGAAACCAGTTATGGCTCGCAAGTTGGTTTCGTAG
AA sequence Show only first row Show all	>Lus10029697 pacid=23151972 polypeptide=Lus10029697 locus=Lus10029697.g ID=Lus10029697.BGIv1.0 annot-version=v1.0 MTILQPPTTRSRTSTVMNQIVSVMLQARPFDANLTSSTTSAALVTADLVSDVLRSIPRFFFLSPRSIGRQNTTRHRSPIKQRNLEVEHCKRRDGSLVLGP GAYRDPRRVCLGVNKALDFFTWLETDLGFQHTESTCRDMAVVLVRGNKLDLLWEFLREMSGRGNGGGLSLVTTMTVTCLMKVLGEEGLVKQALALFYRMK KYHCKPDVYAYNTIIYALCRVGNFKKARDLLQQMELPGFRCPPDTFTYTILISCYCKYSLQTGCRKAIRRRLWEANHLFRLMLFNGFVPDLVTYNCLIDG CCKTNRIGRATELFQDMSKRGCVPNRVTYDSFIRYYSVVNEVEKAVEMLRMMQKMNHGVPSSSSYTPIIHALCESGRALEAWEFLVELVNGGSIPREYTY KLVCEALRSGGEDGLVNDELHDMIREGIDNRFRDVKKVKPVMARKLVS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77405			Pentatricopeptide repeat (PPR)...		Lus10029697 [exp]	0	1
AT4G18520			Pentatricopeptide repeat (PPR)...		Lus10039594 [exp]	2.0	0.8805
AT2G31240			Tetratricopeptide repeat (TPR)...		Lus10003563 [exp]	2.8	0.8721
AT1G59720		CRR28	CHLORORESPIRATORY REDUCTION28,...		Lus10037229 [exp]	3.7	0.8478
AT4G18520			Pentatricopeptide repeat (PPR)...		Lus10029482 [exp]	6.0	0.8601
AT3G02660		EMB2768	EMBRYO DEFECTIVE 2768, Tyrosyl...		Lus10039064 [exp]	7.1	0.8659
AT1G03100			Pentatricopeptide repeat (PPR)...		Lus10007353 [exp]	7.4	0.8584
AT5G18390			Pentatricopeptide repeat (PPR)...		Lus10003575 [exp]	8.5	0.8246
AT4G26680			Tetratricopeptide repeat (TPR)...		Lus10009548 [exp]	12.0	0.8387
AT1G76400			Ribophorin I (.1)		Lus10016038 [exp]	12.3	0.8477
AT4G20980			Eukaryotic translation initiat...		Lus10015435 [exp]	16.2	0.8534

Compare expression of checked genes

Lus10029697 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.