Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12855 64 / 1e-10 F-box family protein (.1) AT3G62380 59 / 2e-09 unknown protein AT4G22390 54 / 1e-07 F-box associated ubiquitination effector family protein (.1) AT2G34280 51 / 7e-07 F-box and associated interaction domains-containing protein (.1) AT3G08750 50 / 2e-06 F-box and associated interaction domains-containing protein (.1) AT2G02030 49 / 5e-06 F-box family protein (.1) AT4G10190 46 / 4e-05 F-box and associated interaction domains-containing protein (.1) AT2G43270 45 / 8e-05 F-box and associated interaction domains-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042738 [exp] 759 / 0 AT1G12855 73 / 1e-13 F-box family protein (.1) Lus10017605 [exp] 47 / 2e-05 AT4G12560 118 / 3e-30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10006687 [exp] 42 / 0.0009 AT4G12560 81 / 5e-17 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G104100 [exp] 384 / 4e-131 AT4G12560 67 / 1e-11 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.007G074084 [exp] 71 / 5e-13 AT1G11270 83 / 1e-17 F-box and associated interaction domains-containing protein (.1.2.3) Potri.004G000900 [exp] 63 / 1e-10 AT4G12560 87 / 2e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G207500 [exp] 59 / 4e-09 AT4G12560 94 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G129200 [exp] 49 / 3e-06 AT3G07870 110 / 8e-27 F-box and associated interaction domains-containing protein (.1) Potri.001G224200 [exp] 49 / 6e-06 AT3G07870 105 / 4e-25 F-box and associated interaction domains-containing protein (.1) Potri.016G012700 [exp] 46 / 4e-05 AT4G12560 143 / 3e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G154500 [exp] 45 / 6e-05 AT4G12560 139 / 7e-37 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G058900 [exp] 45 / 9e-05 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.001G396800 [exp] 44 / 0.0001 AT3G07870 99 / 2e-22 F-box and associated interaction domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [flax] [poplar] FBA PF07734 [flax] [poplar] FBA_1 F-box associated
Representative CDS sequence Show only first row Show all	>Lus10029699 pacid=23151958 polypeptide=Lus10029699 locus=Lus10029699.g ID=Lus10029699.BGIv1.0 annot-version=v1.0 ATGAAGAAAGGAGTGGGAAAGGGGTCCAAATTACTGGAGTCTGTAAAAGAGAGATCTATGTCAAAGAAGATGGAGGATGATGATGGAGACAAGAATCGAC CGGTCTCTTATCTTGACGATGCTTGCATCTCAAGTATTCTCATGATGCTACCACTTGAATCCCTATCTTCTTTAAGGTTTGTTTGCAAGGCGTGGTATGG TATCATCAACAGCCTTACTTTCATCAACAAGCGCTTTGCTCAGTCTGAATCTGTTTTGATTTATCTGAAACCGATTCCTCCTGTGGTGGGGAGCTCCTCA TATGCTCCCTCAACCAAGCAAGAAAACAACAATTGTTTTTCAGTTGAAGGAAAACTGCTTGAATCTCAACCTATCAACTTGTTTGCACTACAATCTGCCA AGAGGTTGACACAGTTCCGCATCAACTTTGTTGAGTTTATCGAGGGGGAAGGTGTAAAGATTGGAGATTACGGCATCAGCTTCCTGGGGAATATTAGAGC AGCATGTGACGGTTTCATTTTGCTAGACAACATTCTGAAGAATGGAGGGCTCTTGGTTATGAACCCTGTGACGAGGAAACTACTAGCTCTTCCCGTGGGA ACATTGTCTGCACCTGGCGAAGAATCTTATGGATTCGCATCGATGATGGATGGTGGTGGCTATAAACTGGTGCACTTGTTCATGGATAACATGAAATATG TTGGCTGTGAGATACTGAACCTTGGCTCTAGATCCTGGAAACCAGTGAATGGACCTCCTTCTTGGCTGTTTCCGGGGTTTCGCCATCATCCTGTTTCGGC CATTGGAGCTCTGCACTGGCTTCCACAGATCGAGGAAAACAATTCCATAGTGTCATTGGAACTGGATACAGAAGTGTTCCATGTCATACCACTTCCCAAG GTCGCCGGGGCTCATGACAGAATCCTCGTAATGGGTGACCTGTTATGTTTCATTACGCACGAGGATCTGGACATTGATATTTGGAAAATGAAGAGTTTAC GTCGTGATGATCGAGAATGGACAAAGCATCATAAGATCACAAGAGGGAGCTTGATTGACATGGTGGCTCTGTTTTGTTTGAGAATCAAAGGAGATGTCGT CTTTAAAAGGCACGAAGACGATTCTGTTTACTCGTACGACTTTGAATCGCAGACGATGACTATGGTTCAGATGGATAAAAAGTTCCATTATACTGGTTGG TTGCTGCCTCATGTGAACAGCGTTGGTTCTTGGACAACAGCAGCTTAG
AA sequence Show only first row Show all	>Lus10029699 pacid=23151958 polypeptide=Lus10029699 locus=Lus10029699.g ID=Lus10029699.BGIv1.0 annot-version=v1.0 MKKGVGKGSKLLESVKERSMSKKMEDDDGDKNRPVSYLDDACISSILMMLPLESLSSLRFVCKAWYGIINSLTFINKRFAQSESVLIYLKPIPPVVGSSS YAPSTKQENNNCFSVEGKLLESQPINLFALQSAKRLTQFRINFVEFIEGEGVKIGDYGISFLGNIRAACDGFILLDNILKNGGLLVMNPVTRKLLALPVG TLSAPGEESYGFASMMDGGGYKLVHLFMDNMKYVGCEILNLGSRSWKPVNGPPSWLFPGFRHHPVSAIGALHWLPQIEENNSIVSLELDTEVFHVIPLPK VAGAHDRILVMGDLLCFITHEDLDIDIWKMKSLRRDDREWTKHHKITRGSLIDMVALFCLRIKGDVVFKRHEDDSVYSYDFESQTMTMVQMDKKFHYTGW LLPHVNSVGSWTTAA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12855			F-box family protein (.1)		Lus10029699 [exp]	0	1
AT1G14140			Mitochondrial substrate carrie...		Lus10030443 [exp]	2.4	0.8657
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Lus10030312 [exp]	5.2	0.8550
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10013216 [exp]	5.2	0.8196
AT1G48840			Plant protein of unknown funct...		Lus10020973 [exp]	5.8	0.8606
AT1G12855			F-box family protein (.1)		Lus10042738 [exp]	6.6	0.8505
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10030734 [exp]	7.1	0.8055
AT1G57790			F-box family protein (.1)		Lus10021352 [exp]	8.8	0.8161
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Lus10038537 [exp]	9.9	0.8263
AT3G58030			RING/U-box superfamily protein...		Lus10016255 [exp]	10.1	0.8314
AT1G13990			unknown protein		Lus10036787 [exp]	10.2	0.8446

Compare expression of checked genes

Lus10029699 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.