Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12080 451 / 9e-149 ATMSL10, MSL10 mechanosensitive channel of small conductance-like 10 (.1.2.3) AT5G19520 427 / 2e-139 ATMSL9, MSL9 mechanosensitive channel of small conductance-like 9 (.1) AT1G53470 427 / 5e-138 MSL4 mechanosensitive channel of small conductance-like 4 (.1) AT3G14810 419 / 1e-134 MSL5 mechanosensitive channel of small conductance-like 5 (.1.2) AT1G78610 411 / 6e-132 MSL6 mechanosensitive channel of small conductance-like 6 (.1) AT2G17000 387 / 7e-123 Mechanosensitive ion channel family protein (.1) AT2G17010 296 / 2e-89 Mechanosensitive ion channel family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036586 [exp] 610 / 0 AT5G12080 573 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10036587 [exp] 587 / 0 AT5G12080 549 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10002960 [exp] 498 / 2e-169 AT5G12080 605 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10006347 [exp] 501 / 1e-167 AT5G12080 659 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10016423 [exp] 477 / 7e-159 AT5G12080 786 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10019694 [exp] 469 / 7e-156 AT5G12080 778 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10027617 [exp] 453 / 4e-147 AT5G12080 839 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Lus10042499 [exp] 447 / 2e-145 AT1G53470 985 / 0.0 mechanosensitive channel of small conductance-like 4 (.1) Lus10038148 [exp] 438 / 1e-141 AT1G53470 983 / 0.0 mechanosensitive channel of small conductance-like 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G073000 [exp] 642 / 0 AT5G12080 536 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.013G072800 [exp] 627 / 0 AT5G12080 512 / 2e-172 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.006G144100 [exp] 514 / 1e-172 AT5G12080 611 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.006G222500 [exp] 481 / 6e-160 AT5G12080 766 / 0.0 mechanosensitive channel of small conductance-like 10 (.1.2.3) Potri.004G178900 [exp] 418 / 3e-134 AT1G78610 819 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.011G105500 [exp] 417 / 7e-134 AT1G78610 869 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.001G384100 [exp] 417 / 1e-133 AT1G78610 852 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Potri.005G246600 [exp] 388 / 1e-123 AT1G53470 644 / 0.0 mechanosensitive channel of small conductance-like 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00924 [flax] [poplar] MS_channel Mechanosensitive ion channel
Representative CDS sequence Show only first row Show all	>Lus10029701 pacid=23152114 polypeptide=Lus10029701 locus=Lus10029701.g ID=Lus10029701.BGIv1.0 annot-version=v1.0 ATGCAGAGCAAAACCTCTGATGATGTTGTTCTGGTAATGGATCCCTATCCAACACCAACAAAACGCCCTATGGCCAGATCCCAATCCATGAAAGAAGATC GTCCGACAAAATCAGCCAAAGCCCGCCGTCGCATCCCTCTCACAAAGCCTAAAGCTCGACTCTTGGAATACAAATACCCTACATCCTCCTCTTCAGTATC ATCACTATCCTCAACATCAATCCGCGACACCAAATATCCACCAACTCACAAACTCCTCTGTTCTGACTCCTCTTCGTCGTCTGACCAGAGCCAGGACGAC GAAGATGACATCAACGGTTTCGAAGAAGAAGATGATGAGGATGAGGATGACGATGTACATGTAAGCACCTCATCCAAGCACTCAAAGAGGAAAAGGAAGA AAAAGTTCTCAGCGTGGCATTTCGTCGAACATGTTGTGTTCGTAATAATACTGTCCTGCCTAATATGTTCCCTGACAATCGAACGCCTCCGGAGGCAACA CAAGTCGGCGTGGAAGTGGTGTTTAATGGTGTTGGTGACCGTCTGTGGGCCGCTGGTTTCCGGGTGGGTGATGTCGCTGGCCGTGTTCGCCATCCAGCGT AACTTCATGCTACGGGAAAAGGTGCTCTACTTCGTGTTGGGGCTACGGAAAAGCATACAGAACTGCGTGTGGTTGGGGCTCATACTGCTCTCATGGACCT GCGTCTTTACCCCGCACCGACACACACTCCTGGACCGTGTCTACAAAGGGCTGGTAGCGCTGCTTGTCGCCGCCGTCATCTGGGTCGTCAAAATCGTCCT CGTCAAAACTCTCGCATCATCCTTCCATGTCGCCAGATATTTCGATCGGATGAAGGAGAGCGTCTTCCACCAATACGTTCTGGATGCCCTTTCCGGCCCT CCCATTACGGCCGAGGAGGAGGGCGAAGAAGTCAAACGGAGCAACGGACGTGCAACGCCAACAGAGTCGAGATCGGTGCGGCCGATAGGAGGAAGAAAGA GGAGGATAAGAAAATTAGAGGACTCGTTGTCAAAGTCGAAATCGTCAACAGCGGCAGCCAACCGTGGTAGAGCAGATATGGTTGAGGAGTTGAGGAGGCT GAGCTTGGAAAGCACGAGGTCGGCTTGGAGTATGAGGAGACTCGTGAACTATATCATGTCGTCAGGGCTGTCGACAATTTCGAAGACGGTGGATGATTTT GCAAAGGCGGAATATGAGATCGGAAACGAGTGGGAAGCGAGGAATGCCGCCAAGAGGATCTTCAAGAACGTCGCCAAGCCTGGTGCCAAGTACATAGATG AAGCCGATCTTGTGAAATTCTTGAAGAGGATTGAGATTCACACAATACTACCATTTTTCGAAGGTGCCCTCGAGACTGGGAAAATCTCCAAATCCTCCTT CAGAAATTGGGTGGTTCGAGCGTATTTGGAGAGAAAATCGTTGGCGCATTCACTAAACGACACAAGAACGGCGGTACAGCAGCTTCACAAGCTAGCCAGT GCAGTCGTGGCGGTAATCATCGTAGTGGTGACAATACTGGTGATGGGCCTGGCAAATCTGCAAGTTATTTTTTTCGTCACGACACAACTAGTCGTGGTGG GTGTGATCTTCCAGAACATGTGTAGGACCGTGTTTGAGTCCATAGTATTCGTCTTCATGATGCACCCTTTCGACATTGGGGATCGCTGCGTGGTTGATGG CGTGCAGATGGTGGTCGAAGAGATGAACATATTGACGACGGTGTTCCTTAGACATGACATGGAGAAGATTTACTATCCGAATTCTATTCTGCTCACTAAA CCGATCAGCAACTTCTACAGAAGCCCCGAGATGAGTGATACCATCGAGTTTTCGATAGACGTTTCGACTCCCATGGACACCATCCATTCCCTTAGGAAGG CCATTCAATTGTACATTGAGAGCAAGCCGAATTACTGGAACCCGTCGACATACGCAGTAAGTGTGAGAGAAATAGAGCCGGGAAACTTGATGAAGATGGC GCTATGCGTGCAGCACACCATCAACCACCAGAACTTCATTGAGCGAAACTATCGGCTTACGGAGCTCATTTTAGAGCTGAAGAGTATCTTTGAGAGTCTT GACATCAAGTATCGCCTTCTTCCTCAAGAGGTTCATCTTACGAGGCTTGTCAGCAACTAA
AA sequence Show only first row Show all	>Lus10029701 pacid=23152114 polypeptide=Lus10029701 locus=Lus10029701.g ID=Lus10029701.BGIv1.0 annot-version=v1.0 MQSKTSDDVVLVMDPYPTPTKRPMARSQSMKEDRPTKSAKARRRIPLTKPKARLLEYKYPTSSSSVSSLSSTSIRDTKYPPTHKLLCSDSSSSSDQSQDD EDDINGFEEEDDEDEDDDVHVSTSSKHSKRKRKKKFSAWHFVEHVVFVIILSCLICSLTIERLRRQHKSAWKWCLMVLVTVCGPLVSGWVMSLAVFAIQR NFMLREKVLYFVLGLRKSIQNCVWLGLILLSWTCVFTPHRHTLLDRVYKGLVALLVAAVIWVVKIVLVKTLASSFHVARYFDRMKESVFHQYVLDALSGP PITAEEEGEEVKRSNGRATPTESRSVRPIGGRKRRIRKLEDSLSKSKSSTAAANRGRADMVEELRRLSLESTRSAWSMRRLVNYIMSSGLSTISKTVDDF AKAEYEIGNEWEARNAAKRIFKNVAKPGAKYIDEADLVKFLKRIEIHTILPFFEGALETGKISKSSFRNWVVRAYLERKSLAHSLNDTRTAVQQLHKLAS AVVAVIIVVVTILVMGLANLQVIFFVTTQLVVVGVIFQNMCRTVFESIVFVFMMHPFDIGDRCVVDGVQMVVEEMNILTTVFLRHDMEKIYYPNSILLTK PISNFYRSPEMSDTIEFSIDVSTPMDTIHSLRKAIQLYIESKPNYWNPSTYAVSVREIEPGNLMKMALCVQHTINHQNFIERNYRLTELILELKSIFESL DIKYRLLPQEVHLTRLVSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10029701 [exp]	0	1
AT1G08650		ATPPCK1, PPCK1	phosphoenolpyruvate carboxylas...		Lus10011824 [exp]	5.5	0.8461
AT3G52500			Eukaryotic aspartyl protease f...		Lus10013324 [exp]	5.7	0.8303
AT1G53160	SBP	SPL4	squamosa promoter binding prot...		Lus10039846 [exp]	9.2	0.8299
AT5G23100			Protein of unknown function, D...		Lus10000863 [exp]	9.9	0.8407
AT3G15990		SULTR3;4	sulfate transporter 3;4 (.1)		Lus10025766 [exp]	11.9	0.8569
AT3G02700			NC domain-containing protein-r...		Lus10010962 [exp]	12.6	0.8615
AT1G49230			RING/U-box superfamily protein...		Lus10005817 [exp]	12.6	0.8252
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Lus10034652 [exp]	12.7	0.8622
AT3G44610			Protein kinase superfamily pro...		Lus10043435 [exp]	16.2	0.8398
AT5G17820			Peroxidase superfamily protein...		Lus10001324 [exp]	20.8	0.8437

Compare expression of checked genes

Lus10029701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.