Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14460 94 / 5e-21 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G69550 52 / 3e-07 disease resistance protein (TIR-NBS-LRR class) (.1) AT2G15080 52 / 4e-07 AtRLP19 receptor like protein 19 (.1.2) AT2G16250 50 / 2e-06 Leucine-rich repeat protein kinase family protein (.1) AT1G27180 49 / 3e-06 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT3G11010 49 / 4e-06 AtRLP34 receptor like protein 34 (.1) AT5G65710 47 / 2e-05 HSL2 HAESA-like 2 (.1) AT3G19320 46 / 2e-05 Leucine-rich repeat (LRR) family protein (.1) AT4G13920 45 / 4e-05 AtRLP50 receptor like protein 50 (.1) AT2G17050 45 / 6e-05 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003571 [exp] 408 / 9e-136 AT3G14470 363 / 6e-110 NB-ARC domain-containing disease resistance protein (.1) Lus10004127 [exp] 372 / 6e-122 AT3G14470 350 / 5e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10004126 [exp] 372 / 2e-121 AT3G14470 353 / 6e-106 NB-ARC domain-containing disease resistance protein (.1) Lus10022900 [exp] 370 / 2e-120 AT3G14470 350 / 2e-104 NB-ARC domain-containing disease resistance protein (.1) Lus10002609 [exp] 363 / 5e-118 AT3G14470 364 / 9e-110 NB-ARC domain-containing disease resistance protein (.1) Lus10022792 [exp] 246 / 5e-74 AT3G14470 343 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Lus10032782 [exp] 130 / 2e-36 AT3G14460 57 / 1e-09 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10011855 [exp] 113 / 2e-30 AT3G14470 52 / 2e-08 NB-ARC domain-containing disease resistance protein (.1) Lus10011856 [exp] 105 / 6e-27 AT3G14460 76 / 5e-16 LRR and NB-ARC domains-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G121900 [exp] 153 / 3e-41 AT3G14470 399 / 2e-122 NB-ARC domain-containing disease resistance protein (.1) Potri.008G212200 [exp] 147 / 3e-39 AT3G14470 392 / 8e-121 NB-ARC domain-containing disease resistance protein (.1) Potri.012G123500 [exp] 146 / 7e-39 AT3G14470 395 / 4e-121 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121851 [exp] 145 / 2e-38 AT3G14470 348 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Potri.012G122900 [exp] 143 / 7e-38 AT3G14470 414 / 6e-129 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121801 [exp] 143 / 7e-38 AT3G14470 410 / 3e-127 NB-ARC domain-containing disease resistance protein (.1) Potri.012G123400 [exp] 142 / 2e-37 AT3G14470 376 / 2e-115 NB-ARC domain-containing disease resistance protein (.1) Potri.012G123200 [exp] 140 / 6e-37 AT3G14470 407 / 1e-125 NB-ARC domain-containing disease resistance protein (.1) Potri.012G122200 [exp] 140 / 8e-37 AT3G14470 411 / 2e-127 NB-ARC domain-containing disease resistance protein (.1) Potri.012G121876 [exp] 138 / 5e-36 AT3G14470 404 / 6e-125 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10029705 pacid=23152074 polypeptide=Lus10029705 locus=Lus10029705.g ID=Lus10029705.BGIv1.0 annot-version=v1.0 ATGGAGAAACGATACCGTAAAATGCATGATTTAGTGCATGATTTTGCACAAATTCTGAGTAAGGATGAATGTGTTAGCATGACAAGCGAAGAGGTGAAAG ATTTAACCGATGTTGCCATCAACGGTATTGTGGTCCGTAATTTGATGTTAGATCGCAACTCGAGGTGGGATGATCTTTCCATCAATGGTTCCCATTTCTT TTTGATGAAGGACTTGCGTAGTTTCATGGCAAACACGTATAAGAACATGGAACCTGATGTGTGGGGTCATTTGTGTGGCATAAGGTCCTTAGTTCTCACT GATAATCGGCTCAAGAAAATCCCTTCGACGATAAATAAATTGATCCATACGAGGCATTTGGATTTGTCCCAGAATAGGTTCTTGGAAGAGTTGCCAGAGG AAATATGCGAGCTTTACAACTTATGGACACTTATCATCAACTGGTGTCATAATTTGGAGAGGCTGCCTCTTGGAATGGGGGATAAACTAGTGAATCTGAA GCATTTCGAGAACGAGAGAACACATGCACCCGTCCCCAAATCAATCGGGAGACTAACTCGTCTCAAGACATTAACAGAGCTTACAATTGATAACGATCAA GTAGAAGGGGGAGCCTCAGTTGCAGATCTAAAGGACATGAATCAACTCCAGGGCCTTCTTAAAGTGTTTGGTCTAAGTAATGTGGCAGGGAGTTGTGAGG CGGAACAAGCTGATTTCGGCCGAAAAACAGCCCTAACCTGTTTAGTTCTCGGATTTTGTGATTATAAATCTAGTACTACGGACGATGATAAGGATGAAGA ATTGTTGGAAGCTGTAAGACCATCCACCAACTTGGAAGAACTGATCATAACTGGTTATATGGGTGCTTCTGTATCTCCGAGCTGGATGGTGTCGCTCTCT AACTTAACCCGCCTTGAATTTCGATGTTGCGAAGAGGTGAAGTATCTACCTCATTTAGGGGCTCTTCCATCTCTCGAATATCGTTCAAAGTAA
AA sequence Show only first row Show all	>Lus10029705 pacid=23152074 polypeptide=Lus10029705 locus=Lus10029705.g ID=Lus10029705.BGIv1.0 annot-version=v1.0 MEKRYRKMHDLVHDFAQILSKDECVSMTSEEVKDLTDVAINGIVVRNLMLDRNSRWDDLSINGSHFFLMKDLRSFMANTYKNMEPDVWGHLCGIRSLVLT DNRLKKIPSTINKLIHTRHLDLSQNRFLEELPEEICELYNLWTLIINWCHNLERLPLGMGDKLVNLKHFENERTHAPVPKSIGRLTRLKTLTELTIDNDQ VEGGASVADLKDMNQLQGLLKVFGLSNVAGSCEAEQADFGRKTALTCLVLGFCDYKSSTTDDDKDEELLEAVRPSTNLEELIITGYMGASVSPSWMVSLS NLTRLEFRCCEEVKYLPHLGALPSLEYRSK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14460			LRR and NB-ARC domains-contain...		Lus10029705 [exp]	0	1
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10021203 [exp]	10.0	0.7571
AT4G37530			Peroxidase superfamily protein...		Lus10011079 [exp]	36.6	0.8035
					Lus10041183 [exp]	37.9	0.7618
AT5G52200		AtI-2	inhibitor-2, phosphoprotein ph...		Lus10014992 [exp]	75.6	0.7673
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013334 [exp]	76.3	0.7506
AT2G14510			Leucine-rich repeat protein ki...		Lus10028407 [exp]	124.0	0.7440
AT2G26975			Ctr copper transporter family ...		Lus10040726 [exp]	127.7	0.7107
AT3G18150			RNI-like superfamily protein (...		Lus10014142 [exp]	180.6	0.7186
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10025507 [exp]	208.4	0.7153

Compare expression of checked genes

Lus10029705 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.