Plant FIBer expression Database

Lus10029706 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G01010 630 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042743
[exp]
826 / 0 AT5G01010 622 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G143700
[exp]
655 / 0 AT5G01010 618 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10029706 pacid=23151960 polypeptide=Lus10029706 locus=Lus10029706.g ID=Lus10029706.BGIv1.0 annot-version=v1.0
ATGGCATCGACGGAGGGCCTTGTGCCCATAACCAGAAAGTTCTTAGCTTCTTACTATGACAAGTACCCTTTTCCTCCATTATCTGATGATGTTTCACGTC
TTTCTTCTGAGATACGCTCTATGATCCTTGATTTACTCAAGGATTCTCCTCCCTCTTCAGACGAGAGTTCATTGGTACAGCAAACAGAGTGCCAGCCCCC
TCATAAAGTTGACGAGAATATGTGGAAGAATCGTGAACAGATGGAAGAAATTCTGTTCTTGCTTGAGAAACCACGCTGGCCTCATGCTCTTCAGCAGCCA
TCAACGTCCCATGACAGCGAGCTTGCTACTACTTTTATGAGCATTCAGGATAAGGTTCAGAAGACTTTGAAGACACTGGAATCTTTTCAATCGAAGAATT
CTGAGCGTGTGTTCAATATTGTGATGACATACATGCCTCAGGATTTTCGAGGAACAATTATCCGATTGCAAAGGGAGAGATCAGAGAAGAATAAGCAAGC
AGATGTTGCTGCATTGATTAGTTCTGGAGGAAGTATACACGATAAATATGCTCTACTTTGGAAGCAACAAATGGATAGGAGACGACAATTGGCTCAGCTT
GGTTCAGCAACAGGTGTATACAAAACTTTGGTGAAGTATTTGGTAGGAGTTCCAGAGGTTTTACTGAATTTCATTCAGCAGATCAATGACGATGAAGGGC
CCATGGAAGAGCAGAGACACCGATATGGACCACCTTTATACAGCCTGACAACAATGATTCTCTTTGTTCGGGTTTTTATTTCACTTTCATGGAGTAGATA
CGATGCTGGTAAAATAAAGAAACATCACGTTGATGTACTGGAACAAGCTGTTTGTGTCTACTCCAACGAGTTTATAAGGTTTATTTCCTTCATCAGCGAG
GTCTTTGCAAACTCTCCATTCTTTATTTCAGCTGAATCTGCTGGTGTAATAGAAGGAAGGAACAGTGATGATTACAAAGAAATCAGTATTCCTGCGGGGA
AGACTCATGAGGTTTTGTTGTCGGTGGACTCAATTAACTCGTACATTGCTTGGGATTTCTCAGTGACACAAGGAAAAATCAGCATGGACACTGGGTTTAG
TGTGGAGTACATAGATTCATCCAGCCAAAAGACCCTGATTTTACCGTACCGTCGTTGCGAGTCTGACCAGGTGAGTTCCCATACACTGATGAATTACTTT
ACTTCTGAAGTGCCTGGAGAGCTTACAAATGTCCGTTCACATACATTGCTGCAGGGGAACTTCTGCACAGTGATGTCTGGAAACTACAAATTAGTTTGGG
ACAATTCATATTCGAGCTTTTTCAAGAAGGTTGTACGGTTTAAGGTGGATTGCATTCCGCCGGTTGTGGAGACAGTTGAATCGGGCAGCCAAGCGAATTA
G
AA sequence
>Lus10029706 pacid=23151960 polypeptide=Lus10029706 locus=Lus10029706.g ID=Lus10029706.BGIv1.0 annot-version=v1.0
MASTEGLVPITRKFLASYYDKYPFPPLSDDVSRLSSEIRSMILDLLKDSPPSSDESSLVQQTECQPPHKVDENMWKNREQMEEILFLLEKPRWPHALQQP
STSHDSELATTFMSIQDKVQKTLKTLESFQSKNSERVFNIVMTYMPQDFRGTIIRLQRERSEKNKQADVAALISSGGSIHDKYALLWKQQMDRRRQLAQL
GSATGVYKTLVKYLVGVPEVLLNFIQQINDDEGPMEEQRHRYGPPLYSLTTMILFVRVFISLSWSRYDAGKIKKHHVDVLEQAVCVYSNEFIRFISFISE
VFANSPFFISAESAGVIEGRNSDDYKEISIPAGKTHEVLLSVDSINSYIAWDFSVTQGKISMDTGFSVEYIDSSSQKTLILPYRRCESDQVSSHTLMNYF
TSEVPGELTNVRSHTLLQGNFCTVMSGNYKLVWDNSYSSFFKKVVRFKVDCIPPVVETVESGSQAN

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G01010 unknown protein Lus10029706
[exp]
0 1
AT1G71790 Subunits of heterodimeric acti... Lus10003086
[exp]
1.7 0.8792
AT1G68370 ARG1 ALTERED RESPONSE TO GRAVITY 1,... Lus10034344
[exp]
2.0 0.8962
AT5G19670 Exostosin family protein (.1) Lus10034951
[exp]
2.6 0.8666
AT3G55020 Ypt/Rab-GAP domain of gyp1p su... Lus10036500
[exp]
3.0 0.8614
AT5G61530 small G protein family protein... Lus10032491
[exp]
7.4 0.8572
AT2G21270 UFD1 ubiquitin fusion degradation 1... Lus10018057
[exp]
8.0 0.8655
AT3G45850 P-loop containing nucleoside t... Lus10036146
[exp]
9.5 0.8600
AT3G19980 STPP, ATFYPP3, ... SERINE/THREONINE PROTEIN PHOSP... Lus10013456
[exp]
9.8 0.8129
AT5G01010 unknown protein Lus10042743
[exp]
9.8 0.8867
AT2G46180 GC4 golgin candidate 4 (.1) Lus10036406
[exp]
10.0 0.8720

Lus10029706 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.