Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10960 147 / 3e-42 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT2G32070 142 / 3e-40 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G80780 136 / 4e-38 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) AT1G15920 132 / 2e-36 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) AT1G06450 132 / 8e-36 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G61470 129 / 3e-35 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G27820 129 / 4e-35 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G44260 126 / 3e-34 AtCAF1a CCR4- associated factor 1a, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G27890 122 / 2e-32 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G22250 121 / 2e-32 AtCAF1b CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042746 [exp] 557 / 0 AT5G10960 150 / 2e-43 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10029713 [exp] 555 / 0 AT5G10960 144 / 4e-41 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10007771 [exp] 362 / 5e-126 AT1G61470 170 / 5e-51 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10000327 [exp] 228 / 3e-73 AT1G06450 174 / 1e-51 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10035078 [exp] 220 / 5e-70 AT1G06450 168 / 2e-49 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10008043 [exp] 217 / 7e-69 AT1G06450 165 / 5e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10001651 [exp] 211 / 2e-65 AT1G61470 167 / 4e-49 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10017905 [exp] 209 / 2e-65 AT1G06450 162 / 5e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10035077 [exp] 200 / 5e-62 AT1G61470 162 / 6e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G038700 [exp] 183 / 8e-56 AT1G61470 182 / 8e-56 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.001G046700 [exp] 159 / 5e-47 AT2G32070 472 / 2e-170 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.003G181100 [exp] 156 / 7e-46 AT1G80780 468 / 1e-168 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) Potri.006G262500 [exp] 155 / 3e-45 AT2G32070 443 / 5e-159 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.018G020900 [exp] 152 / 3e-44 AT2G32070 441 / 2e-158 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.004G200400 [exp] 137 / 2e-38 AT5G22250 419 / 3e-149 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G187200 [exp] 134 / 3e-37 AT2G32070 403 / 2e-143 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.009G161500 [exp] 132 / 1e-36 AT5G22250 387 / 1e-136 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.001G040400 [exp] 120 / 4e-32 AT5G22250 253 / 4e-84 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G205600 [exp] 120 / 9e-32 AT5G22250 302 / 4e-103 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF04857 [flax] [poplar] CAF1 CAF1 family ribonuclease
Representative CDS sequence Show only first row Show all	>Lus10029710 pacid=23151969 polypeptide=Lus10029710 locus=Lus10029710.g ID=Lus10029710.BGIv1.0 annot-version=v1.0 ATGGTTACATACGTTCGACAAGTGTGGGATTCGGATCTCCGGCGAGAGCTTGCAGTTCTGGAACAGGCGCTTCCAAAGTACCCAGTACTCAGTGTGGATT GCGATGGATTCCTGCTCAAAACACCAAGAAACCCTACTGGCGATCTTTGGTATAGCGATCTCAAACACAAAGTCGACCAAACCCACATCACCCAACTCAG CGTCGCTCTTTCCGACCACGGCGGAACCGTCTTCTGCACCTGGAAGTTCAATTTTGAGTTTGATGTTGACGAAGATGTTCACACCAAAGACACGGTCGCA TTTCTGAAGGGTCAGGGAATTGATTTCCAAAAGCATAGAGCGGATGGCATCAAAAGGACTCGATTTGGTGCCCAATTCTGCAACTTGATGGCGAGCAAAA CCACTCCTCTGACATGGGTCACCTTCCATGGGTTGTATGATTTTGCTCACATCCTCAAGGTGCTTACCAACAACACACCCATGCCTGACACGCCTTCTGG CTTTAGAGACTTGTTGGGATATTCTTTTGAGGAGATTGTCGATCTCAAGGTGATGGCCAAGTTTTGCGATGGAATTTCTGATATGGAGGAGGTTGGGTTG CAGAAACTGGCAGATTTGCTGAGCATCAAGAGAGAGGATGGTGAAGCTTTACATGAAGCTGGTTCTGACAGTTTACTCACTGCAATGGTGTTTTCCAACA TGAGAAGAAGAGTCCAAGATGATCAACATGATGTATATACTGATTATCTCTTTGGAATCACTGAAAGGATTGGAAGAAGCCCTGCCATTCAGGTTCGCTT CTCCCACCGATGGTTGTGCCAGCCGCTGCTGCCATTGCACGTTCCATGCTATCGTCGTTATCGTCCTTATCCTCGTCCTCCTCGTCGATGTCTTCTTCTT CCCCTGCATCCCCCTACAAGAATGGGTCAGTACTGA
AA sequence Show only first row Show all	>Lus10029710 pacid=23151969 polypeptide=Lus10029710 locus=Lus10029710.g ID=Lus10029710.BGIv1.0 annot-version=v1.0 MVTYVRQVWDSDLRRELAVLEQALPKYPVLSVDCDGFLLKTPRNPTGDLWYSDLKHKVDQTHITQLSVALSDHGGTVFCTWKFNFEFDVDEDVHTKDTVA FLKGQGIDFQKHRADGIKRTRFGAQFCNLMASKTTPLTWVTFHGLYDFAHILKVLTNNTPMPDTPSGFRDLLGYSFEEIVDLKVMAKFCDGISDMEEVGL QKLADLLSIKREDGEALHEAGSDSLLTAMVFSNMRRRVQDDQHDVYTDYLFGITERIGRSPAIQVRFSHRWLCQPLLPLHVPCYRRYRPYPRPPRRCLLL PLHPPTRMGQY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10960			Polynucleotidyl transferase, r...		Lus10029710 [exp]	0	1
AT5G10960			Polynucleotidyl transferase, r...		Lus10029713 [exp]	1.4	0.7928
AT5G10960			Polynucleotidyl transferase, r...		Lus10042746 [exp]	2.2	0.8291
AT2G26270			unknown protein		Lus10038079 [exp]	13.0	0.6977
AT5G06740			Concanavalin A-like lectin pro...		Lus10036986 [exp]	13.0	0.6890
AT5G51990	AP2_ERF	CBF4, DREB1D	DEHYDRATION-RESPONSIVE ELEMENT...		Lus10031657 [exp]	14.8	0.7244
					Lus10025700 [exp]	15.7	0.7298
AT4G39680			SAP domain-containing protein ...		Lus10016433 [exp]	16.0	0.7243
AT5G48720		XRI1, XRI	x-ray induced transcript 1 (.1...		Lus10038181 [exp]	18.5	0.7140
AT1G53025			Ubiquitin-conjugating enzyme f...		Lus10028151 [exp]	31.9	0.7050
AT4G24290			MAC/Perforin domain-containing...		Lus10037363 [exp]	41.0	0.6632

Compare expression of checked genes

Lus10029710 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.