Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11050 549 / 0 Protein kinase superfamily protein (.1) AT2G48010 379 / 2e-123 RKF3 receptor-like kinase in in flowers 3 (.1) AT1G09440 256 / 5e-78 Protein kinase superfamily protein (.1) AT4G01330 249 / 3e-75 Protein kinase superfamily protein (.1.2) AT1G56720 249 / 4e-75 Protein kinase superfamily protein (.1.2.3) AT1G01540 248 / 5e-75 Protein kinase superfamily protein (.1.2) AT2G42960 248 / 6e-75 Protein kinase superfamily protein (.1) AT5G18500 248 / 6e-75 Protein kinase superfamily protein (.1.2) AT3G59110 247 / 4e-74 Protein kinase superfamily protein (.1) AT4G34500 241 / 7e-73 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018855 [exp] 639 / 0 AT1G11050 473 / 7e-163 Protein kinase superfamily protein (.1) Lus10028549 [exp] 565 / 0 AT1G11050 448 / 8e-155 Protein kinase superfamily protein (.1) Lus10001295 [exp] 526 / 7e-180 AT1G11050 770 / 0.0 Protein kinase superfamily protein (.1) Lus10012701 [exp] 508 / 6e-173 AT1G11050 760 / 0.0 Protein kinase superfamily protein (.1) Lus10028552 [exp] 488 / 6e-166 AT1G11050 463 / 1e-156 Protein kinase superfamily protein (.1) Lus10018861 [exp] 483 / 1e-163 AT1G11050 465 / 4e-157 Protein kinase superfamily protein (.1) Lus10028551 [exp] 481 / 6e-163 AT1G11050 442 / 2e-148 Protein kinase superfamily protein (.1) Lus10029714 [exp] 451 / 4e-152 AT1G11050 411 / 6e-137 Protein kinase superfamily protein (.1) Lus10018860 [exp] 378 / 6e-126 AT1G11050 384 / 6e-129 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G181800 [exp] 768 / 0 AT1G11050 604 / 0.0 Protein kinase superfamily protein (.1) Potri.017G132800 [exp] 588 / 0 AT1G11050 805 / 0.0 Protein kinase superfamily protein (.1) Potri.017G133000 [exp] 585 / 0 AT1G11050 830 / 0.0 Protein kinase superfamily protein (.1) Potri.004G084900 [exp] 572 / 0 AT1G11050 821 / 0.0 Protein kinase superfamily protein (.1) Potri.014G136400 [exp] 334 / 2e-105 AT2G48010 794 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.014G136466 [exp] 332 / 1e-104 AT2G48010 792 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.005G040200 [exp] 326 / 5e-103 AT2G48010 613 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.013G028000 [exp] 321 / 3e-102 AT2G48010 497 / 6e-171 receptor-like kinase in in flowers 3 (.1) Potri.017G132250 [exp] 301 / 1e-97 AT1G11050 430 / 2e-148 Protein kinase superfamily protein (.1) Potri.006G128500 [exp] 273 / 1e-85 AT1G16670 353 / 3e-120 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10029711 pacid=23152110 polypeptide=Lus10029711 locus=Lus10029711.g ID=Lus10029711.BGIv1.0 annot-version=v1.0 ATGGTGTCTCTACTTATCAGTTATCATTATTTCCCGGGAGATTCACAGGCTCACGCACAAGTAGAGCACAGCATGGCAATGGCGATCACCTTTCCCTTCT TCTGCCCTTCCTTCATTCTCTACTACTCACTCTTCTTCGCCACTATTATCCCTCCCCTTCCAACTTCATCAGCTCCCGTGCTTCCTCCGCGCTGCCCTTT CGATCTAAGCTACGTACGCACAATTCCATGGGACACATCCAACTGCCAGCTCCCAAACACCCCGCACTGCTGCGAAACCCTCCGCAACCTCTTCGGCATC GGAATCGCCCTCCACCTCCGCGACACCTCCCTCTTCCAGCTCCCGGACTCCCAAGTCTCCTCCGCCTGCCTCTCAGACTTCAAGTCCCAACTAACCGCCA TCTCAATCCAGGCTTCCTTCGTCCCTCGCTGCCTCAACCCCAATCAATTCGTCTCCAACGCTTCTAGCTGCGGTGGAATCGTCACCGTCTCCGACTGGAT CCAGCGCGTCGGGATTCTCACCCCGCTCCACGCCTCTTGTAGAGGCGATGTCTCCAGCGGCACCAGCTGCAGCTCTTGTTTGGAGGCCGGGTTGAAGGTT AGTTCCCAGCTCACTAATATCCGCCGTAATTCGTCTTCCAAGTGTTTCGCCTTCACTTGCTTGTACGCTGTTGCTATGGTTAACGACCTTGGTCCTTTGG ATGCCAAGACATCTGAATGTATTTTGGCCCTCCCCTTGATAAACCCTGATAATGGGAACGACAATGGCATTGCTCTAGGGTTGATTTTGGGATGCGTAAG TGGTGGTGTTGCTCTTCTGATTGCGGCAGGATTGATTGTGACTTTGTACCGGAAGCGACGGAGGAAGAGGAAAGATGTTGAGGCTTCCCATGACCAATTT GTCAACGATTTCAAATCTGCAATTTCCGGAATCAAGTGGTTTCAATCGTCTGAACTGGAAAAGGCCACTAATAAATTCTCCAGGAGGAATTTCCTAGGCA AGGGAGCTTTCGGCGTTGTGTACAAAGGTGTTCTTTCCGACGGGAGTTTGGTCGCTGTGAAGGAAATGCTGCAGGATCTTGATTCACTTAGGGATGAGGA TTTCTTCAATGAGGTTGAGATAATAAGCAAGATCAGGCACAGGAATCTGCTCTCCCTGCAAGGATGCTGCGTCACTAGCGATGAGCTCAGAGGTCGAAGG AGGTTTCTGGTGTATGATTACATGTCGAACGGGAGTCTCGGGGATCATCTAGGCAGTGATCACTCGAGGAATCAGTTGACTTGGCCTCAAAGGAAGAACA TCATCCTTGATGTGGCGAAAGCACTGGCCTATCTCCACCATGGGATCAAACCTCCGGTTTATCACCGTGACATCAAGGCCAACAACATACTGCTCGACAA CAAAATGAAAGCTAAATTGGCAGATTTCGGGCTGGCGAGGCAGAGCTCGGAAGGGCGGTCTCATCTAACAACAAGAGTTGCCGGGACACATGGTTATCTG GCACCTGAGTACGCTCTGTACGGGCAGTTAACGGAGAAGAGTGACGTTTACAGCTTTGGGATTGTGGTTCTTGAAGTCATGAGTGGGAGGAAGGTTATTG ATACTACGTCGAGCTCTTCATATCTTCTGATTGCAGACTGGGCGTGGATGGTGTTGAAATCAGGGAGGATGGAGGATATCTTTGACGAGGCGATAAGGGA GCAGGGTCCTAAAGTGGTGATGGAGAGATTTGTTCTCGTCGGAATGCTATGTGCTCATGTTACGGTGGGTGCCAGACCCACAATTGCGGATGCTTTGAAA ATGCTAGAGGCGGATATAGATATACCGAACTTACCTGACCGGCCATTGCCACCCGGCCATGACTCGTTTAGGCAATCGGCCAAAGTTCCGGATTTCAATT CATGGGTGAGTCAGAGATCAGCAAACTCGAGCTAA
AA sequence Show only first row Show all	>Lus10029711 pacid=23152110 polypeptide=Lus10029711 locus=Lus10029711.g ID=Lus10029711.BGIv1.0 annot-version=v1.0 MVSLLISYHYFPGDSQAHAQVEHSMAMAITFPFFCPSFILYYSLFFATIIPPLPTSSAPVLPPRCPFDLSYVRTIPWDTSNCQLPNTPHCCETLRNLFGI GIALHLRDTSLFQLPDSQVSSACLSDFKSQLTAISIQASFVPRCLNPNQFVSNASSCGGIVTVSDWIQRVGILTPLHASCRGDVSSGTSCSSCLEAGLKV SSQLTNIRRNSSSKCFAFTCLYAVAMVNDLGPLDAKTSECILALPLINPDNGNDNGIALGLILGCVSGGVALLIAAGLIVTLYRKRRRKRKDVEASHDQF VNDFKSAISGIKWFQSSELEKATNKFSRRNFLGKGAFGVVYKGVLSDGSLVAVKEMLQDLDSLRDEDFFNEVEIISKIRHRNLLSLQGCCVTSDELRGRR RFLVYDYMSNGSLGDHLGSDHSRNQLTWPQRKNIILDVAKALAYLHHGIKPPVYHRDIKANNILLDNKMKAKLADFGLARQSSEGRSHLTTRVAGTHGYL APEYALYGQLTEKSDVYSFGIVVLEVMSGRKVIDTTSSSSYLLIADWAWMVLKSGRMEDIFDEAIREQGPKVVMERFVLVGMLCAHVTVGARPTIADALK MLEADIDIPNLPDRPLPPGHDSFRQSAKVPDFNSWVSQRSANSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11050			Protein kinase superfamily pro...		Lus10029711 [exp]	0	1
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10014598 [exp]	1.0	0.6955
AT2G18760		CHR8	chromatin remodeling 8 (.1)		Lus10003543 [exp]	8.9	0.6894
AT2G18790		OOP1, HY3, PHYB	OUT OF PHASE 1, phytochrome B ...		Lus10037771 [exp]	17.7	0.6589
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Lus10009011 [exp]	18.2	0.6357
AT2G18790		OOP1, HY3, PHYB	OUT OF PHASE 1, phytochrome B ...		Lus10016911 [exp]	19.6	0.6532
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10039458 [exp]	22.3	0.6447
AT2G38970			Zinc finger (C3HC4-type RING f...		Lus10040413 [exp]	27.0	0.6493
AT5G18550	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10002880 [exp]	39.8	0.6488
AT1G17120		CAT8	cationic amino acid transporte...		Lus10005574 [exp]	47.3	0.6009
AT5G06460		ATUBA2 ,UBA 2	ARABIDOPSIS THALIANA UBIQUITI...		Lus10031292 [exp]	48.4	0.6261

Compare expression of checked genes

Lus10029711 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.