Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17900 564 / 0 ASHR1, SDG37 ASH1-related 1, SET domain group 37 (.1) AT2G19640 82 / 9e-17 SDG39, ASHR2 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) AT1G33400 64 / 1e-10 TPR9 tetratricopeptide repeat 9, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G26760 60 / 2e-09 SDG35, ATXR1 SET domain protein 35 (.1) AT3G21820 55 / 7e-08 SDG36, ATXR2 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1) AT5G06620 54 / 7e-08 SDG38, ATXR4 SET domain protein 38 (.1) AT1G43245 50 / 2e-06 SET domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026202 [exp] 71 / 1e-12 AT1G33400 655 / 0.0 tetratricopeptide repeat 9, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004628 [exp] 61 / 7e-10 AT2G19640 399 / 4e-138 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) Lus10026687 [exp] 58 / 7e-09 AT2G19640 400 / 3e-138 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) Lus10015102 [exp] 54 / 3e-07 AT3G21820 613 / 0.0 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1) Lus10031573 [exp] 52 / 6e-07 AT3G21820 603 / 0.0 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1) Lus10013535 [exp] 51 / 1e-06 AT5G06620 367 / 2e-127 SET domain protein 38 (.1) Lus10037155 [exp] 51 / 2e-06 AT1G26760 573 / 0.0 SET domain protein 35 (.1) Lus10020116 [exp] 49 / 1e-05 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10042464 [exp] 48 / 1e-05 AT1G33400 374 / 1e-121 tetratricopeptide repeat 9, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G173100 [exp] 592 / 0 AT2G17900 657 / 0.0 ASH1-related 1, SET domain group 37 (.1) Potri.001G071700 [exp] 66 / 3e-11 AT2G19640 416 / 2e-144 SET DOMAIN PROTEIN 39, ASH1-related 2, ASH1-related protein 2 (.1.2) Potri.016G144200 [exp] 61 / 1e-09 AT1G33400 700 / 0.0 tetratricopeptide repeat 9, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G196566 [exp] 54 / 2e-08 AT5G06620 229 / 2e-75 SET domain protein 38 (.1) Potri.008G089500 [exp] 56 / 5e-08 AT1G26760 646 / 0.0 SET domain protein 35 (.1) Potri.017G038700 [exp] 53 / 3e-07 AT3G21820 645 / 0.0 SET DOMAIN PROTEIN 36, histone-lysine N-methyltransferase ATXR2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [flax] [poplar] SET SET domain CL0175 [flax] [poplar] TRASH PF01753 [flax] [poplar] zf-MYND MYND finger
Representative CDS sequence Show only first row Show all	>Lus10029712 pacid=23151943 polypeptide=Lus10029712 locus=Lus10029712.g ID=Lus10029712.BGIv1.0 annot-version=v1.0 ATGGAGGCTTTGGAAATTACGCTTCGAAATCGTGGCTTGCTAGTATCTAATCTGCCGGAGAAAGGTCGATGCCTTTTGGCTGGAAAGGCTTTTAATCCAG GGGAAGTAATAATACGTCAGGAGCCATACGCGTGTGTTCCGAAGAACAGTGCCACTGAATCCAGGTGTGATGGATGTTTCAAGACCGGGAAGCTCAAGAA ATGTTCTGGTTGTCAAGTTGTGTGGTATTGTGGAAGCAGTTGCCAGAAATCACAGTGGCAGTTGCATCGTCTAGAGTGTAATGTGCTTTCCAGGCTTGAA AAGGGCAGGCGGAAATCTGTTACTCCTACCATTCGTCTGATACTGAAACTTTACCTTCGCAGGAAGTTGCAAAGAAACAAGGTCATCCCAACCACCCCTA CGGACAACTATAATCTGGTGGAAGCACTGGTAGCTCGTATCCTTTTGGTGTTGTTTGGCTTGTTTTATCAAAATGTTATGTTTGGTGCAGTTGAGATTCA GTCACTAGATTTGTGTTTTCTTAACCTTCTGTTTGGTGAAGATATGGAAGACATTGATGAGAAGCAACTACTGTTGTATGCTCAGATGGCCAACCTTGTC AACCTGATCCTTCAATTGCCTGAGTCTGAGACCGACATCAAAGAAATCGCCCGAAACTTCTCGAGGCTTGCTTGCAACGCTCATACCATCTGTGACAGTG AATTGAGACCCATTGGAACTGGACTATATCCAGTTGTATCCATCATTAATCATAGCTGCCTGCCGAATGCCGTCCTGGTTTTTGAAGGAAATTCTGCTGT GGTTAGAGCCATGCAACATGTACCAGAAGGCCATGAGGTATTGATATCTTATATCGAAACTGCTGGAAGTACTGTGACTCGGCAGAAGGCTCTCAAAGAA CAATACTTTTTCACTTGTGCTTGCCTCCGCTGCAGCAAATTGGGTCAACCAGATGATATTCGGGAAAGCGCGATTTTGGAAGGTTACCGGTGTACCGACG AAAAATGCAACGGTTACTTACTCCGAGATTCCGCTAACAGAGGATTTGTATGCCAATCCTGCAGCCGGCTAAGAACCAACCTAGAGATGAAAAAATTGGC TGCAGAAGTAAAGGAACTGTCTGAAGAAGCTCAGAAGTCTATCTATATCCTTAAAGATATTGAGAAGATGCAAAGGAAATTGTTCCATCCATTTTCAGTT ACATTAGTGCAAACTCGTGAAAAGCTTATAAAGAGGCTAATGGATGAAGAAGACTGGCAAGAAGCTCTGGAATATTGCAAATTGACCATTCCTGTTTATG AAAAAGTATATCCTGAATTCCATCCATTGCTTGGATTGCAGTACTACACATGTGGGAAGCTGGAGTGGTTGCTTGGAGGCACTGAAAATTCTATCAAGTC ATTGACTAACGCAGCAAGAATACTTTGTATTACTCATGGCACAGATACACTCTTTGTGAAGGAGCTCCTACTGAAGGTGGAAGAAGCACGTGCCGAAGCT GCGTACAAACTTCAATATCATGACGACTAG
AA sequence Show only first row Show all	>Lus10029712 pacid=23151943 polypeptide=Lus10029712 locus=Lus10029712.g ID=Lus10029712.BGIv1.0 annot-version=v1.0 MEALEITLRNRGLLVSNLPEKGRCLLAGKAFNPGEVIIRQEPYACVPKNSATESRCDGCFKTGKLKKCSGCQVVWYCGSSCQKSQWQLHRLECNVLSRLE KGRRKSVTPTIRLILKLYLRRKLQRNKVIPTTPTDNYNLVEALVARILLVLFGLFYQNVMFGAVEIQSLDLCFLNLLFGEDMEDIDEKQLLLYAQMANLV NLILQLPESETDIKEIARNFSRLACNAHTICDSELRPIGTGLYPVVSIINHSCLPNAVLVFEGNSAVVRAMQHVPEGHEVLISYIETAGSTVTRQKALKE QYFFTCACLRCSKLGQPDDIRESAILEGYRCTDEKCNGYLLRDSANRGFVCQSCSRLRTNLEMKKLAAEVKELSEEAQKSIYILKDIEKMQRKLFHPFSV TLVQTREKLIKRLMDEEDWQEALEYCKLTIPVYEKVYPEFHPLLGLQYYTCGKLEWLLGGTENSIKSLTNAARILCITHGTDTLFVKELLLKVEEARAEA AYKLQYHDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17900		ASHR1, SDG37	ASH1-related 1, SET domain gro...		Lus10029712 [exp]	0	1
AT3G05675			BTB/POZ domain-containing prot...		Lus10013580 [exp]	1.4	0.9184
AT5G39360		EDL2	EID1-like 2 (.1)		Lus10029662 [exp]	2.0	0.9101
AT5G52880			F-box family protein (.1)		Lus10027549 [exp]	3.5	0.9027
AT3G10850		GLY2, GLX2-2	GLYOXALASE 2-2, Metallo-hydrol...		Lus10029004 [exp]	4.0	0.8941
AT5G01260			Carbohydrate-binding-like fold...		Lus10004826 [exp]	6.9	0.8857
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Lus10012931 [exp]	7.3	0.8805
AT1G67390			F-box family protein (.1)		Lus10013664 [exp]	9.2	0.8743
AT2G17787			unknown protein		Lus10017274 [exp]	10.0	0.8891
AT1G76730			NagB/RpiA/CoA transferase-like...		Lus10018870 [exp]	10.1	0.8511
AT4G36720		HVA22K	HVA22-like protein K (.1)		Lus10010093 [exp]	12.4	0.8827

Compare expression of checked genes

Lus10029712 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.