Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80780 144 / 5e-41 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) AT5G10960 144 / 6e-41 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT2G32070 141 / 5e-40 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G06450 137 / 1e-37 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G61470 132 / 2e-36 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G27820 131 / 6e-36 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G15920 131 / 6e-36 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) AT3G44260 127 / 1e-34 AtCAF1a CCR4- associated factor 1a, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G27890 124 / 3e-33 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G22250 121 / 2e-32 AtCAF1b CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029710 [exp] 544 / 0 AT5G10960 147 / 2e-42 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10042746 [exp] 533 / 0 AT5G10960 150 / 2e-43 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10007771 [exp] 360 / 6e-125 AT1G61470 170 / 5e-51 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10000327 [exp] 230 / 5e-74 AT1G06450 174 / 1e-51 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10035078 [exp] 223 / 5e-71 AT1G06450 168 / 2e-49 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10008043 [exp] 219 / 2e-69 AT1G06450 165 / 5e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10001651 [exp] 213 / 3e-66 AT1G61470 167 / 4e-49 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10017905 [exp] 211 / 3e-66 AT1G06450 162 / 5e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10035077 [exp] 201 / 1e-62 AT1G61470 162 / 6e-48 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G038700 [exp] 179 / 3e-54 AT1G61470 182 / 8e-56 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.001G046700 [exp] 154 / 5e-45 AT2G32070 472 / 2e-170 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.003G181100 [exp] 151 / 7e-44 AT1G80780 468 / 1e-168 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3) Potri.006G262500 [exp] 150 / 2e-43 AT2G32070 443 / 5e-159 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.018G020900 [exp] 147 / 2e-42 AT2G32070 441 / 2e-158 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.004G200400 [exp] 136 / 3e-38 AT5G22250 419 / 3e-149 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G187200 [exp] 132 / 1e-36 AT2G32070 403 / 2e-143 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.009G161500 [exp] 132 / 2e-36 AT5G22250 387 / 1e-136 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.001G040400 [exp] 122 / 9e-33 AT5G22250 253 / 4e-84 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.006G205600 [exp] 119 / 2e-31 AT5G22250 302 / 4e-103 CCR4- associated factor 1b, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF04857 [flax] [poplar] CAF1 CAF1 family ribonuclease
Representative CDS sequence Show only first row Show all	>Lus10029713 pacid=23152073 polypeptide=Lus10029713 locus=Lus10029713.g ID=Lus10029713.BGIv1.0 annot-version=v1.0 ATGGTTACATACGTTCGACAAGTGTGGGATTCGGATCTCCGGCGAGAGCTTGCAGTTCTGGAACAGGCGCTTCCAAAGTACCCAGTACTCAGTGTGGATT GCGATGGATTCCTGCTCAAAACACCAAGAACCCCTACTGGCGATCTTTGGTATAGCGATCTCAGACTCACCGTCGACCAAACCCACATCATGCAACTCGG CGTCACTCTCTCCAACCACGGAGGAACCGTCTTCTCAACCTGGAAGTTCAACTTTGAGTTGGATGTTGACGAAGATGTTCACACCAAAGACACGGTCGCA TTTCTGAAGGGTCAGGGAATTGATTTCCAAAAGCATAGAGCGGATGGCATCAAAAGGACTCGATTTGGTGCCCAATTCTGCAACTTGATGGCGAGCAAAA CCACTCCTCTGACATGGGTCACCTTCCATGGGTTGTATGATTTTGCTCACATCCTCAAGGTGCTTACCAACAACACACCCATGCCTGACACGCCTTCTGG CTTTAGAGACTTGTTGGGATATTCTTTTGAGGAGATTGTCGATCTCAAGGTGATGGCCAAGTTTTGCGATGGAATTTCTGATATGGAGGAGGTTGGGTTG CAGAAACTGGCAGATTTGCTGAGCATCAAGAGGGAGGATGGTGAAGCTTTACATGAAGCTGGTTCTGACAGTTTACTCACTGCAATGGTGTTTTCCAACA TGAGAAGAAGATTCCAAGATGATCAACATCATGTATATACTGATTATCTCTTTGGAATCACTGAAAGGATTGGAAGAAGCCCTGCCATTCAGGTTCGCTA CTCCCACCGATGGTTGTGCCAGCCGCTGCTCCCATTGCGCGTTCCATGCTATCGTCGTTATCGTCCTTATCCTCGTCCTCCTCGTCGATGTCTTCTTCTT CCCCTGCATACCTCTACAGGAATGGGTCAGTACTGA
AA sequence Show only first row Show all	>Lus10029713 pacid=23152073 polypeptide=Lus10029713 locus=Lus10029713.g ID=Lus10029713.BGIv1.0 annot-version=v1.0 MVTYVRQVWDSDLRRELAVLEQALPKYPVLSVDCDGFLLKTPRTPTGDLWYSDLRLTVDQTHIMQLGVTLSNHGGTVFSTWKFNFELDVDEDVHTKDTVA FLKGQGIDFQKHRADGIKRTRFGAQFCNLMASKTTPLTWVTFHGLYDFAHILKVLTNNTPMPDTPSGFRDLLGYSFEEIVDLKVMAKFCDGISDMEEVGL QKLADLLSIKREDGEALHEAGSDSLLTAMVFSNMRRRFQDDQHHVYTDYLFGITERIGRSPAIQVRYSHRWLCQPLLPLRVPCYRRYRPYPRPPRRCLLL PLHTSTGMGQY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10960			Polynucleotidyl transferase, r...		Lus10029713 [exp]	0	1
AT5G10960			Polynucleotidyl transferase, r...		Lus10029710 [exp]	1.4	0.7928
					Lus10019295 [exp]	1.4	0.7002
AT5G48720		XRI1, XRI	x-ray induced transcript 1 (.1...		Lus10038181 [exp]	15.3	0.6949
AT3G09150		ATHY2, GUN3, HY...	GENOMES UNCOUPLED 3, ARABIDOPS...		Lus10022422 [exp]	21.9	0.5814
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Lus10007689 [exp]	33.9	0.5518
AT1G48650			DEA(D/H)-box RNA helicase fami...		Lus10009643 [exp]	48.1	0.5938
AT1G05280			Protein of unknown function (D...		Lus10027153 [exp]	56.5	0.5584
AT1G06240			Protein of unknown function DU...		Lus10017666 [exp]	57.0	0.5935
AT1G02010		SEC1A	secretory 1A (.1.2)		Lus10015870 [exp]	91.0	0.5471
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10026929 [exp]	142.9	0.5007

Compare expression of checked genes

Lus10029713 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.