Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11050 376 / 2e-123 Protein kinase superfamily protein (.1) AT2G48010 296 / 1e-92 RKF3 receptor-like kinase in in flowers 3 (.1) AT4G02630 228 / 5e-68 Protein kinase superfamily protein (.1) AT3G24540 228 / 1e-67 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G09440 226 / 2e-67 Protein kinase superfamily protein (.1) AT1G01540 225 / 4e-67 Protein kinase superfamily protein (.1.2) AT3G58690 221 / 2e-66 Protein kinase superfamily protein (.1) AT1G52290 223 / 5e-66 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT4G01330 222 / 6e-66 Protein kinase superfamily protein (.1.2) AT1G76370 218 / 3e-65 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028552 [exp] 520 / 2e-179 AT1G11050 463 / 1e-156 Protein kinase superfamily protein (.1) Lus10028551 [exp] 504 / 2e-173 AT1G11050 442 / 2e-148 Protein kinase superfamily protein (.1) Lus10018861 [exp] 504 / 3e-173 AT1G11050 465 / 4e-157 Protein kinase superfamily protein (.1) Lus10018860 [exp] 416 / 3e-142 AT1G11050 384 / 6e-129 Protein kinase superfamily protein (.1) Lus10018855 [exp] 401 / 1e-135 AT1G11050 473 / 7e-163 Protein kinase superfamily protein (.1) Lus10028549 [exp] 398 / 1e-135 AT1G11050 448 / 8e-155 Protein kinase superfamily protein (.1) Lus10029711 [exp] 376 / 7e-123 AT1G11050 549 / 0.0 Protein kinase superfamily protein (.1) Lus10012701 [exp] 342 / 1e-109 AT1G11050 760 / 0.0 Protein kinase superfamily protein (.1) Lus10001295 [exp] 341 / 2e-109 AT1G11050 770 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G181800 [exp] 474 / 2e-161 AT1G11050 604 / 0.0 Protein kinase superfamily protein (.1) Potri.017G133000 [exp] 424 / 1e-141 AT1G11050 830 / 0.0 Protein kinase superfamily protein (.1) Potri.017G132800 [exp] 419 / 1e-139 AT1G11050 805 / 0.0 Protein kinase superfamily protein (.1) Potri.004G084900 [exp] 409 / 1e-135 AT1G11050 821 / 0.0 Protein kinase superfamily protein (.1) Potri.017G132250 [exp] 265 / 2e-84 AT1G11050 430 / 2e-148 Protein kinase superfamily protein (.1) Potri.005G040200 [exp] 273 / 1e-83 AT2G48010 613 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.014G136400 [exp] 266 / 1e-80 AT2G48010 794 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.014G136466 [exp] 266 / 1e-80 AT2G48010 792 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.013G028000 [exp] 261 / 4e-80 AT2G48010 497 / 6e-171 receptor-like kinase in in flowers 3 (.1) Potri.006G128500 [exp] 242 / 1e-74 AT1G16670 353 / 3e-120 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10029714 pacid=23152152 polypeptide=Lus10029714 locus=Lus10029714.g ID=Lus10029714.BGIv1.0 annot-version=v1.0 ATGGTCGAAGCAGTCGTTTATTTAGGTCTGGCTGCGCATCTCAGACAAACCTCCACTTTCTTCCTCCCGAATTCAACCTACTACTTATCGTCGCCCTGTA TCTCCGCCGTCCAGCTGCAGCTCGCCACTCTAGGGCTCGATCCACCGGCCCGCATTTGCTTCGGCAACTCTTCGTCGATTTTCTTCGGCAGTCCTCAAAA TTGCCCTGGAATCTCGACCTCGAAAGATTGGACTAGAATTGCTGGCTCGACGGCGGCGGCTTCGTTGAACAAATCTTGCCAAGGAGATCTGAGCAGTTCC ACCGAAGCCTGCGATTCCTGCTTCGAGGAAGTGGACAGCGTAAACAGTCAAATGGCGATGAGTAATTTGGACTCCAATCAAACTGACTGCTTCCTTTTGT CCTTGTTGTATGCTGTTGGGGTTGTGAACCAGTATGGCCCTTTAGATAATCGGACTTCCACTTGCGTGATTTCTCGGATTTATGGCGTCTTAGAAACAAA TAAGGAAACTAGCAGCAGTAGCAGTAGCAGTAGTAGTAGAAGGAAGATACTTGAGTTTGTTTTGGGGGTTTCGGGAGCTGTGATTGTGATACTTGTGTTG GTGGCGTTGATTTGTAAGAGTAGGATCAAGAATTGGAGAAAGCTGAAGGATTCCTCTGAACTGGAATCCGAAGATATTACCACTTATTACAATGAAAGTG ATGGTGGTCTCCTGTTAGCTAACATTGGTATGAAATTGTTCAGTTTTCAAAAGCTTGAGGATGCTACTAACGGATTCTCCCAGGAGAATTTGCTTGGAAA AGGGACATTTGGAGTTGTGTATAGAGGAACCCTTGAGGATGGTTCTTTAGCTGCTATCAAAGAGCTTGTGATGGAGGTTGAATCCATATTGCCAAATGAT CATGAATTTATGAATGAAATCAGGATCGTAGGCATGATCAAACACAGGAATCTCCTTCCCCTTCGTGGCTACTGCATGATGGCAAGTAATAACAGGAAAG TGAAGAGGAGGTTTCTGGTATATGATTTCATGGCTAATGGTAGCGTTGCAGACCATTTATGTAGCGTGGAAAGAAGAATGGAACTGTGTTGGGAGCATAG GAGGAACATCATTCTTGATGTGGCTAAGGGGCTTCTTTACTTGCATTGCGGGGTGAAGCCTGCTATTTTTCACCGGGATATTAAGTCGAGCAATATACTT CTCGACTCGGAATTTCGAGCTAAAGTTGCAGATTTTGGGTTGGCGAAGCAAGGGATAGATGGATGCTCTCACATCACTGCCACAAGGGTGGCCGGCACGC ATGGCTTTCTAGCACCCGAGTATGCAATCTACGGACACTTAACTGAGAAAACCGACATATACAGCTTCGGGATCCTGATACTTGAAATCATGACAGCAAG GAAGGTGATCGATTCTTCATCAGGTTCGCGGGTTGTTCTGATCTCAGACTGGGCATGGAATTTAGTGAAATCTGGTAATGTAAGTGGAGTTTTTGATGAT ACTATGATGTTGATGAAGAAGAATGAGATGTGTGAAGGTGGTGAGATGGAGAGGTTTGTTCTTGTGGGGATTCTTTGTGCGCATACCGTTGCTGCTCATA GGCCTACCATTGCTGATGCTCTGAGGATGTTGGAAGGTGGAATTGAAGTCCCAAGAATACCAGAAAGGGTTTCTTCTGCTGTTGTTTAG
AA sequence Show only first row Show all	>Lus10029714 pacid=23152152 polypeptide=Lus10029714 locus=Lus10029714.g ID=Lus10029714.BGIv1.0 annot-version=v1.0 MVEAVVYLGLAAHLRQTSTFFLPNSTYYLSSPCISAVQLQLATLGLDPPARICFGNSSSIFFGSPQNCPGISTSKDWTRIAGSTAAASLNKSCQGDLSSS TEACDSCFEEVDSVNSQMAMSNLDSNQTDCFLLSLLYAVGVVNQYGPLDNRTSTCVISRIYGVLETNKETSSSSSSSSSRRKILEFVLGVSGAVIVILVL VALICKSRIKNWRKLKDSSELESEDITTYYNESDGGLLLANIGMKLFSFQKLEDATNGFSQENLLGKGTFGVVYRGTLEDGSLAAIKELVMEVESILPND HEFMNEIRIVGMIKHRNLLPLRGYCMMASNNRKVKRRFLVYDFMANGSVADHLCSVERRMELCWEHRRNIILDVAKGLLYLHCGVKPAIFHRDIKSSNIL LDSEFRAKVADFGLAKQGIDGCSHITATRVAGTHGFLAPEYAIYGHLTEKTDIYSFGILILEIMTARKVIDSSSGSRVVLISDWAWNLVKSGNVSGVFDD TMMLMKKNEMCEGGEMERFVLVGILCAHTVAAHRPTIADALRMLEGGIEVPRIPERVSSAVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11050			Protein kinase superfamily pro...		Lus10029714 [exp]	0	1
AT1G78650		POLD3	DNA-directed DNA polymerases (...		Lus10039192 [exp]	11.3	0.8131
AT5G05810		ATL43	RING/U-box superfamily protein...		Lus10023617 [exp]	12.6	0.7714
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10041029 [exp]	15.9	0.7959
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10024838 [exp]	20.5	0.8030
AT4G39200			Ribosomal protein S25 family p...		Lus10035060 [exp]	24.2	0.7857
AT1G67590			Remorin family protein (.1.2)		Lus10026481 [exp]	25.7	0.7647
AT1G01370		CENH3, HTR12	CENTROMERIC HISTONE H3, Histon...		Lus10008119 [exp]	31.0	0.7944
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Lus10024371 [exp]	32.3	0.7946
AT1G60660		B5 #5, B5#5, AT...	ARABIDOPSIS CYTOCHROME B5-LIKE...		Lus10012954 [exp]	32.8	0.7584
AT3G53730			Histone superfamily protein (....		Lus10005898 [exp]	34.8	0.7863

Compare expression of checked genes

Lus10029714 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.