Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21650 1606 / 0 SECA2 Preprotein translocase SecA family protein (.1.2.3) AT4G01800 666 / 0 AtcpSecA, AGY1, SECA1 Arabidopsis thaliana chloroplast SecA, Albino or Glassy Yellow 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042747 [exp] 1954 / 0 AT1G21650 1587 / 0.0 Preprotein translocase SecA family protein (.1.2.3) Lus10009973 [exp] 619 / 0 AT4G01800 1589 / 0.0 Arabidopsis thaliana chloroplast SecA, Albino or Glassy Yellow 1 (.1.2) Lus10038031 [exp] 553 / 0 AT4G01800 1517 / 0.0 Arabidopsis thaliana chloroplast SecA, Albino or Glassy Yellow 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G078000 [exp] 1716 / 0 AT1G21650 1753 / 0.0 Preprotein translocase SecA family protein (.1.2.3) Potri.014G112266 [exp] 700 / 0 AT4G01800 1707 / 0.0 Arabidopsis thaliana chloroplast SecA, Albino or Glassy Yellow 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF07517 [flax] [poplar] SecA_DEAD SecA DEAD-like domain CL0023 [flax] [poplar] PF01043 [flax] [poplar] SecA_PP_bind SecA preprotein cross-linking domain CL0023 [flax] [poplar] PF07516 [flax] [poplar] SecA_SW SecA Wing and Scaffold domain
Representative CDS sequence Show only first row Show all	>Lus10029715 pacid=23151995 polypeptide=Lus10029715 locus=Lus10029715.g ID=Lus10029715.BGIv1.0 annot-version=v1.0 ATGGCAACTACTTCTCTTCCTTTATTCAACCCTTCCTTTCTTACCCCAAAATCGCCTAATGAATCCCCATCTCCACTCTTCTTCAGACCCATCTCTGTTA CACCCTTTTCAACAACCTACTGCTATCCTTGTATTCGTTTGCTCCATCCAAGTCGTCCCAGCTCAAGTATCCAAGAGAAATTGGGTGAACTGAGAGACAG GGTAGCTGATTTGACGAGCTTAAACCAGTGGGTTGTTAAGGATTACTATCGTCTAGTTGAGTCTGTTAATGCATTTGAGCCGCAAATGCAGAAACTTTCT GATGAGCAGTTGACGGCCAAAACTGGGGAGTTTCGGACGCGGCTGAAACTAGGGGAAACGCTGGCAGACATTCAAGCTGAGGCTTTCGCTGTTGTTCGGG AAGCTGCAAGACGGAAACTTGGGATGCGCCATTTTGACGTGCAGATTATTGGTGGTGCAGTGCTTCATGATGGATCAATTGCTGAGATGAAAACAGGAGA GGGGAAAACATTAGTTTCAACGTTAGCTGCATATCTTAATGCACTAACTGGTGAGGGTGTCCATATTGTTACTGTAAATGATTACTTAGCTCAACGTGAT GCTGAATGGATGGGTCGTGTTCATCGCTTCTTAGGTCTTTCTGTTGGTCTCATACAGAAGGATATGACCTCTAAAGAGCGAAGGTCTAATTACAGATGTG ACATAACATATACTAATAATTCAGAGCTTGGTTTTGATTATCTACGAGATAATCTTGCTGGAAACAGTGTGCAACTTGTTATGAGATGGCCAAAGCCCTT TCATTTTGCGATAGTTGACGAAGTGGATTCAGTTCTCATCGATGAAGGAAGAAATCCTTTGTTAATCAGTGGTGAGGCTGATAAAGATGCTGCAAGATAT CCGGTTGCTGCTAAAGTAGCTGAGCTTCTTTCAAAGGAAATTCACTACAAAGTGGAGCTTAAAGATAATTCAGTGGAGTTGACAGAAGAGGGCATAGCTT TAGCCGAGATGGCTCTCGAAACAAATGATCTTTGGGATGAAAATGATCCCTGGGCTAGATTTGTATTAAATGCTCTGAAAGCTAAAGAATTCTATAGGCG AGATGTACAATATATGGTTAGAAATGGGAAGGCTCTCATCATTAATGAGTTGACAGGAAGAGCAGAGGAGAAGAAGAGATGGTCTGATGGAATTCACCAA GCAGTAGAGGCAAAAGAAGGATTGGAAATTGAGGCTGATACTGTAGTTGTTGCACAAATAACATACCAATCACTGTTTAAACTCTACCCAAAGCTGTCAG GAATGACTGGAACTGCAAAAACTGAAGAAAAGGAGTTCCTAAAAATGTTCCATGTTCCAGTTGTCGTGGTGCCAACAAATCTGCATAATATTCGTAAAGA TTTGCCTATACAAGCTTTTGCAACTGCACGTGGGAAATGGGAGCATGCACGCCAAGAAGTTAAATACATGTTTCAACAAGGCCGGCCTGTGTTAGTAGGG ACAACAAGCGTTGAGAACTCCGAGTACCTGTCTGCTCTACTTAAAGAGTGGAAGATCCCCCACAATGTATTAAATGCAAGACCTAAGTATGCTGCAAGGG AAGCTGAGATTGTTGCCCAGGCAGGGAGAAAAAATGCCATCACTATTTCCACAAATATGGCTGGTAGAGGCACTGATATTATTTTGGGTGGGAACCCAAA GATGCTTGCAAAAGAAGTCATAGAGGACAGCTTACTTTCTTATCTAACCCAGGAGAGACCAACGACTGATATCGATGGAGAGGCACTATCTGACAAGGTA TTATCAAAGATACGTGTTGGTGCGACATCATTAGCTCTACTAGCAAAGACGTCATTAATGGCTAAATATGTGGGTAAAAGTGAAGGCAAGGACTGGACAT ATCAAGAAGCAAAGTCAATGATATCAAAATCTGTGGAAATAAGCGAGTCATTGGGCATGGAAGAGCTACAAAAGCTTGCTGATGAGGAGTCTGAGATATA TCCCCTTGGACCAAATATAGCACTCTCTTATCTATCAGTTCTTAAGGACTGTGAAGTGCATTGCTCAAATGAGGGATCTGAAGTGAAACAACTAGGCGGC CTTCATGTTATTGGAACATCTTTGCACGAGTCACGGAGAATAGATAACCAGCTTCGTGGAAGAGCAGGAAGGCAAGGGGATCCTGGATCCACACGATTCA TGGTCAGCTTGCAGGATGAAATGTTTCAGAAGTTCAATTTTGATACCCAGTGGGCTGTGAGCCTCATCTCAAAGATCACTGATGATGAAGACTTACCGAT TGAGGGTGATTTTATCGTCAGACAGCTCTTAGGGCTGCAAATCAACGTGGAGAAGTACTTCTTTGGCATCAGAAAGAGCCTGGTTGAGTTTGATGAAGTA TTGGAGGTGCAAAGGAAACACGTTTATGACCTTCGTCAAGTCATTTTAACAGGTGACAGTGAAAGTTGTAGCCAGCACATTTTCCAGTATATGCAGGCAA TCGTTGACGATATCGTATTTCACAATGCCGATCCTACAAAGTGTCCACAAAACTGGAATACGGGCATGATCTTAAAGGAGTTTATCAACGTTGGAGGAAG TCTGTTGGATGGGATCACTGAAGAAACCTTGCTGCAAGCTCTCATACAATCACAGGAACCCAGTTCTATAGACATCAATAATTTTTGCCTTCCAAATATG CCGAAGGCACCAAATACATTAAGAGGAATTCGGAAGAAGTGTTCTTCACTGAAGCGTTGGCTTTGCATTTGCTCTGATGATTCAACCAAGAATGGGAGAT ACAGGATGACAACCAATCTTCTCCGGAAGTACCTGGGAGACTTTCTTATCGCTTCATATTGTGGTGTCATAGAAGAGTCCGGATATGATGATACATATAT CAAAGAGATCGAGAGAGCAGTTCTCTTGAAGACCCTGGATTGTTTCTGGAGGGATCATCTTGTAAACATGAACCAACTCAGTTCCGCGGTCAACGTTAGA AGCTTCGGTCATAGAAATCCTCTTGAAGAATACAAAATCGATGGGTGTAGATTCTTCATTTCAATGCTGAGTGCAACTAGAAGAATGAGCATTGACGCAC TGTTTCAGTACTGGTCATCTCCCATGGAATCTCACGAACTCTTTGTATAA
AA sequence Show only first row Show all	>Lus10029715 pacid=23151995 polypeptide=Lus10029715 locus=Lus10029715.g ID=Lus10029715.BGIv1.0 annot-version=v1.0 MATTSLPLFNPSFLTPKSPNESPSPLFFRPISVTPFSTTYCYPCIRLLHPSRPSSSIQEKLGELRDRVADLTSLNQWVVKDYYRLVESVNAFEPQMQKLS DEQLTAKTGEFRTRLKLGETLADIQAEAFAVVREAARRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHIVTVNDYLAQRD AEWMGRVHRFLGLSVGLIQKDMTSKERRSNYRCDITYTNNSELGFDYLRDNLAGNSVQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEADKDAARY PVAAKVAELLSKEIHYKVELKDNSVELTEEGIALAEMALETNDLWDENDPWARFVLNALKAKEFYRRDVQYMVRNGKALIINELTGRAEEKKRWSDGIHQ AVEAKEGLEIEADTVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFHVPVVVVPTNLHNIRKDLPIQAFATARGKWEHARQEVKYMFQQGRPVLVG TTSVENSEYLSALLKEWKIPHNVLNARPKYAAREAEIVAQAGRKNAITISTNMAGRGTDIILGGNPKMLAKEVIEDSLLSYLTQERPTTDIDGEALSDKV LSKIRVGATSLALLAKTSLMAKYVGKSEGKDWTYQEAKSMISKSVEISESLGMEELQKLADEESEIYPLGPNIALSYLSVLKDCEVHCSNEGSEVKQLGG LHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFNFDTQWAVSLISKITDDEDLPIEGDFIVRQLLGLQINVEKYFFGIRKSLVEFDEV LEVQRKHVYDLRQVILTGDSESCSQHIFQYMQAIVDDIVFHNADPTKCPQNWNTGMILKEFINVGGSLLDGITEETLLQALIQSQEPSSIDINNFCLPNM PKAPNTLRGIRKKCSSLKRWLCICSDDSTKNGRYRMTTNLLRKYLGDFLIASYCGVIEESGYDDTYIKEIERAVLLKTLDCFWRDHLVNMNQLSSAVNVR SFGHRNPLEEYKIDGCRFFISMLSATRRMSIDALFQYWSSPMESHELFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21650		SECA2	Preprotein translocase SecA fa...		Lus10029715 [exp]	0	1
AT2G36070		ATTIM44-2	translocase inner membrane sub...		Lus10022930 [exp]	4.1	0.8322
AT1G33400		TPR9	tetratricopeptide repeat 9, Te...		Lus10026202 [exp]	6.5	0.8271
AT1G73875			DNAse I-like superfamily prote...		Lus10032490 [exp]	9.4	0.8051
AT1G28210		ATJ1	DNAJ heat shock family protein...		Lus10020949 [exp]	13.8	0.7589
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10018962 [exp]	14.4	0.7370
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Lus10011791 [exp]	14.5	0.7871
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10024689 [exp]	15.0	0.7656
AT2G30320			Pseudouridine synthase family ...		Lus10042233 [exp]	15.4	0.7296
AT3G09850			D111/G-patch domain-containing...		Lus10019584 [exp]	18.7	0.7848
AT1G72320		APUM23	pumilio 23 (.1.2.3)		Lus10022388 [exp]	18.7	0.7756

Compare expression of checked genes

Lus10029715 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.