Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21640 1153 / 0 ATNADK2, NADK2, ATNADK-2 NAD kinase 2 (.1.2) AT3G21070 268 / 4e-79 NADK1, ATNADK-1 NAD kinase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000856 [exp] 1412 / 0 AT1G21640 1205 / 0.0 NAD kinase 2 (.1.2) Lus10028677 [exp] 1297 / 0 AT1G21640 1112 / 0.0 NAD kinase 2 (.1.2) Lus10003178 [exp] 268 / 9e-79 AT3G21070 768 / 0.0 NAD kinase 1 (.1.2) Lus10009958 [exp] 234 / 4e-67 AT3G21070 700 / 0.0 NAD kinase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G078700 [exp] 1279 / 0 AT1G21640 1191 / 0.0 NAD kinase 2 (.1.2) Potri.005G182600 [exp] 1224 / 0 AT1G21640 699 / 0.0 NAD kinase 2 (.1.2) Potri.001G256100 [exp] 266 / 3e-78 AT3G21070 774 / 0.0 NAD kinase 1 (.1.2) Potri.009G051500 [exp] 261 / 4e-76 AT3G21070 754 / 0.0 NAD kinase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0240 [flax] [poplar] PFK PF01513 [flax] [poplar] NAD_kinase ATP-NAD kinase
Representative CDS sequence Show only first row Show all	>Lus10029717 pacid=23151956 polypeptide=Lus10029717 locus=Lus10029717.g ID=Lus10029717.BGIv1.0 annot-version=v1.0 ATGGAGGCACGCCTCTGCGTCTGCTGCCACGTGTCCACCGCCGATATGAGCTTGTTCTCCTCTCCGGCTATCGGAGGATGCTTTCTATCTCCCCGCCCTC CTCCTTCTCAGGCGATGCTGCTTGGCCTTGGGTCGTTTGTACAGTTTCAGAGGAAGCAGCAGCGGAGGAAGTTCAAGTTGCTCGTAGCTCCTGATTCCTC CTCCCTTGATTTGGATTTCCGCGAGTCTCTGAAATATAACCAGTCTTATGACCAATCACAGTCACCCTGGATTGGTCCCATACCTGGGGATATTGCTGAA GTCGAGGCGTATTGCAGAATTTTTAGGGCAGCTGAACAGCTTCATGCTGCAATGATGAAAAGACTATGTAATCCAGTGACTGGGGAATGTAATCTTCCCT ATGATTATCTTCCAGAAGAGAAACCGTTGTTAGAAGATAAAATTGTATTGGTTCTTGGGGCTATGGTATCACTTCTTAACAAAGGAAGGGAAGATGTTCT TTCTGGACGATCTTCCATCATGCAATCTTTTTGTAGATCGGATATAAGCGCGGTGAATGATGATGTCCTTCCACCTCTTGCCATATTCAGGAGTGAGATG AAAAGATGCTGCGAAAGTCTGCATGTTGCTCTTGAAAACTATTTGACTCCTGATGATGGTCAAGGCCTAGAAGTATGGAGGAGACTTCAAAGGTTGAAGA ATGTCTGCTATGATTCAGGCTTCCCTCGTTCCGATGAATGCCCTTGCCATACACTGTTGGCAAATTGGAATGCTGTATATTCATTTTCACAGAAAGAAGG AATTGAAGCAGAAAGTTCTCACCCAGAATTTTGGATGGGTGGGCAGGTTTCAGAGGAGGCATTGAATTGGTTATTAGAAAAGGGATTCAGAACTATAGTA GATCTTAGAGCAGAAACTATAAATGATAACTTTTACAAAGCAGCAATTGATAGCGCTCTTTTATCTGGCAAGGTAGAAGTGGTTCAGATTCCTGTTGAAG TTGGCACATCACCTTCTGTGGAGCAGGTTGAAATGTTTGCCTCGTTAGTTTCGGATTTTGGTAAAAAGCCGATATACCTTCATAGTAAAGAGGGACTGCA GAGAACTTCTGCGTTGGTATCCAGATGGAGACAGTACATGACTCGTAAATCATCCCAGTTCACAGTTCTTAGTGGCATGATGGTACAGGAGGAACAAGAG ACCCTTCTGTACCAGGAAAATGGATCTAAAGAACATGCTTCCCATGAGATTTACACTTCCAATGGGTTATCTCATGGTGAAGTTGGTGTTTCAGCTACAG CCAGGAAAGACCAGATGATCAATGGGACTGTGCAAGGCCTGGGCTTTGTTAACACATCTTCAGAAACAATTAATAAAGAATTAGGTTCTTTACTAAACGC TAGTTGGGTAACTGACCCTCTAAACGCTCAGCTTCCTCCTTGTAATGTGTTCTCCAAGGCAGAGATGTCTTGGTTCATGAAGAATAAAAAGGTCTTGCCT TCTGCACTCTCAAAGAATCAATCCACAAAAGTAAAGACGTTGTCTAGTTTGAGATCGGATGGTGAATTTAGGAAGCAAACCAGTGCAGCACTGGAGCTGA TTGAACGAACCAATGGATTAAGTAGTAATATGAATGATAGAGGTCATCTTTCTATCGGTGCAGATGCAAATGCCTTCAATGCCTATGAGCAACATCCCAT TTTGCATAATGGTGTCTCTTCTAGTTTAAATAAAGGCTTAAGTGACCATGTTAGATGTAATCATGTTAAAAATGACATGGAGAGCAATGATAGAGGCTCT GCTAGCTTCAGTGATGATGAGTTGGACTCATTGGAAGGTGACATGTGTGCTTCTACTACTGGTGTTGTAAGGTTACAGTCTCGAAAGAAAGCAGAAATGT TTCTGGTACGCACAGATGGGTTCTCATGCGCAAGAGAAAAAGTTACTGAGTCTAGCTTGGCATTCACTCATCCGAGTACCCAGCAGCAGATGCTCATGTG GAAATCTCCACCGAAAACGGTATTGTTGTTGAAGAAGCTGGGTCAAGAACTTATGGAAGAAGCTAAAGAGGTTGCTTCTTTCTTATACCACCAAGAAAAA ATGAATGTCCTTGTGGAACCAGATGTTCATGATGTATTTGCTCGAATGCCAGGTTTTGGCTTCATTCAGACCTTTTATAGTCAAGATACTAGTAATCTTT ATGAGAGGATTGATTTTGTTGCATGCTTGGGAGGAGATGGTGTTATACTTCATGCATCTAATCTGTTCAGAGATGCAGTTCCTCCTGTTGTGTCCTTTAA TCTGGGATCTCTAGGATTTCTCACTTCTCATAACTTTGAAGACTTCCGGAAGGACCTCAGGCAACTGATCCATGTGAACACCACCGTTGGTGTGTATATA ACTCTCAGAATGCGCCTAAGGTGTGAAATTTTTCGCAATGGTAAAGCAGTCCCAGGCAAAGTATTTGATGTCCTAAATGAGTTGGTTGTTGAACGAGGTT CAAATCCGTACCTTTCGAAGATTGAATGTTACGAACATGGCCGTCTTATAACCAAGGTGCAAGGTGATGGAGTCATTGTGGCCACTCCTACTGGAAGTAC AGCATATTCTACTGCGGCTGGAGGTTCCATGGTGCATCCAAATGTTCCTTGTATGCTATTTACTCCAATCTGCCCACATTCACTCTCATTCAGGCCGGTC ATCCTTCCAGATTCTGCGCGACTCGAGTTAAAGATTCCGGAGGATGCTCGGAGCAATGCATGGGTATCGTTCGACGGGAAGAGAAGGCAGCAACTTTCGA GAGGAGATTCGGTGAAGATATGCATGAGCCAGCACCCTCTTCCGACTGTCAACAAAAACGACCAAACAGGTGACTGGTTCCACAGCTTGATTCGTTGCCT GAACTGGAATGAAAGGCAAGATCAGAAAGCCTTGTGA
AA sequence Show only first row Show all	>Lus10029717 pacid=23151956 polypeptide=Lus10029717 locus=Lus10029717.g ID=Lus10029717.BGIv1.0 annot-version=v1.0 MEARLCVCCHVSTADMSLFSSPAIGGCFLSPRPPPSQAMLLGLGSFVQFQRKQQRRKFKLLVAPDSSSLDLDFRESLKYNQSYDQSQSPWIGPIPGDIAE VEAYCRIFRAAEQLHAAMMKRLCNPVTGECNLPYDYLPEEKPLLEDKIVLVLGAMVSLLNKGREDVLSGRSSIMQSFCRSDISAVNDDVLPPLAIFRSEM KRCCESLHVALENYLTPDDGQGLEVWRRLQRLKNVCYDSGFPRSDECPCHTLLANWNAVYSFSQKEGIEAESSHPEFWMGGQVSEEALNWLLEKGFRTIV DLRAETINDNFYKAAIDSALLSGKVEVVQIPVEVGTSPSVEQVEMFASLVSDFGKKPIYLHSKEGLQRTSALVSRWRQYMTRKSSQFTVLSGMMVQEEQE TLLYQENGSKEHASHEIYTSNGLSHGEVGVSATARKDQMINGTVQGLGFVNTSSETINKELGSLLNASWVTDPLNAQLPPCNVFSKAEMSWFMKNKKVLP SALSKNQSTKVKTLSSLRSDGEFRKQTSAALELIERTNGLSSNMNDRGHLSIGADANAFNAYEQHPILHNGVSSSLNKGLSDHVRCNHVKNDMESNDRGS ASFSDDELDSLEGDMCASTTGVVRLQSRKKAEMFLVRTDGFSCAREKVTESSLAFTHPSTQQQMLMWKSPPKTVLLLKKLGQELMEEAKEVASFLYHQEK MNVLVEPDVHDVFARMPGFGFIQTFYSQDTSNLYERIDFVACLGGDGVILHASNLFRDAVPPVVSFNLGSLGFLTSHNFEDFRKDLRQLIHVNTTVGVYI TLRMRLRCEIFRNGKAVPGKVFDVLNELVVERGSNPYLSKIECYEHGRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPV ILPDSARLELKIPEDARSNAWVSFDGKRRQQLSRGDSVKICMSQHPLPTVNKNDQTGDWFHSLIRCLNWNERQDQKAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Lus10029717 [exp]	0	1
AT1G07705			NOT2 / NOT3 / NOT5 family (.1....		Lus10040875 [exp]	1.0	0.8801
AT3G49410			Transcription factor IIIC, sub...		Lus10042710 [exp]	13.2	0.8513
AT3G13330		PA200	proteasome activating protein ...		Lus10008354 [exp]	13.5	0.8635
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10014156 [exp]	15.6	0.8375
AT1G70610		ABCB26, ATTAP1	ATP-binding cassette B26, tran...		Lus10022270 [exp]	17.0	0.8186
AT1G02080			transcription regulators (.1.2...		Lus10042876 [exp]	21.1	0.8562
AT3G01150		ATPTB1, PTB	polypyrimidine tract-binding p...		Lus10030688 [exp]	23.5	0.8137
AT5G59710		ATVIP2, VIP2	VIRE2 interacting protein 2 (....		Lus10004921 [exp]	23.7	0.8383
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10008452 [exp]	25.8	0.8400
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10032833 [exp]	26.2	0.8244

Compare expression of checked genes

Lus10029717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.