Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02220 339 / 1e-113 zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein (.1) AT5G64830 51 / 7e-07 programmed cell death 2 C-terminal domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042748 [exp] 554 / 0 AT4G33270 592 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10021075 [exp] 45 / 8e-05 AT5G64830 192 / 5e-59 programmed cell death 2 C-terminal domain-containing protein (.1.2) Lus10017236 [exp] 45 / 9e-05 AT5G64830 196 / 3e-61 programmed cell death 2 C-terminal domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G201200 [exp] 358 / 5e-121 AT4G02220 511 / 0.0 zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein (.1) Potri.007G080500 [exp] 48 / 7e-06 AT5G64830 293 / 7e-97 programmed cell death 2 C-terminal domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04194 [flax] [poplar] PDCD2_C Programmed cell death protein 2, C-terminal putative domain
Representative CDS sequence Show only first row Show all	>Lus10029718 pacid=23152092 polypeptide=Lus10029718 locus=Lus10029718.g ID=Lus10029718.BGIv1.0 annot-version=v1.0 ATGGAAGCAACTAGTAGTTCCGGTGCAGATACCATGGAAGACCTCAAGGGACTTCGGATTTCTTCCCTTGACAGTGACGAAGACGACGATGCTTTGGAAG AAGGAAGTAAGAAACTGGATGTCGAAGATGAAGACGATGAAGAGGAAGATGAAGAGGTAGAACCAGTAATGCTAGGGTTTCTGGAGAAGCCTGAGCATCC TTGGTCTCTTCTTCGCCAGTCATTCCCCAGCAAGGCTGGTGGTGCCCCGGCGTGGCTGGACGCTGTTAATTTGCCTTCTGGAAATCATTCTCTTTGTGAT ACATGTGGGAAGCCTCTTAGATTCGTGCTTCAGGTATATGCTCCAATTACAGAAAAGGAATCAACATACCACCGGACGTTATTTGTGTTTATGTGCCCCA AAATGTCTTGTCTTCTTCGAGATCAACATGAGCAGTGGAAACGTAAACCTGAACAGCCTTCTAGGAGGTTTTTCGTTGCCAATTGCCTCTTGTCAATCCC TTTTACTCGAGTGAGACCCCGCGAAATGATGGCAGGGACAAGCCATCTCAACCTGGAGGTCGTTTATCCGCTGTTCTCTGTGACCGTTGTGGTACTTGGA AAGGAGATAAACTTTGCGGTAGATGCAAGAAAGTACACTACTGTTCAGAAAGGCATCAGCGCAAGCATTGGGAATCAGATCATAAGTATCAGTGTCGCCA AGTGGAAAATTCTCTGGAGCTATCCTACTGTGGCTCTACTTAATCTTGTGCTCACAACAAATGCTTTCCATTTCACAGTTCCTACCAAAAAGTTGTGGCC AGAATATGAGATAGTGGATGAAGATGAAGCTGAATTCGGTGAAAAACTGTCTGATGATACTGAGAACGCCATGACTCTTGTATCCATGAATGAAAAAAAT GACTCAATGAAGTCCGTCATAGACGGGTTTAAGGCAGATATTGACAAAAGGACATTTGCAAATTTTGAACAACGCAGAGCCAGAGCTCCTGACCAAGTTC TGAGGTATTGCCGGAGTCCGACTGCGAAACCCCTCTGGCCAATTTTCAGTGGCCGTCTACCGAAGGCTGATATTCCCAGTTGCAAGTACTGTGGTGGTCG TATGATCTTCGAATTTCAGATATTGTCTACTTTGCTATACTACTTCAAAGTGGATAACGAAGTGAACTCTCTCGACTGGGCTACTGTGGTGGTATACACC TGCGAATCTTCATGTGATGCCTCTGTTGCATACAAAGAAGAGTTTGTCTGGGTTCAGCTCCATTGA
AA sequence Show only first row Show all	>Lus10029718 pacid=23152092 polypeptide=Lus10029718 locus=Lus10029718.g ID=Lus10029718.BGIv1.0 annot-version=v1.0 MEATSSSGADTMEDLKGLRISSLDSDEDDDALEEGSKKLDVEDEDDEEEDEEVEPVMLGFLEKPEHPWSLLRQSFPSKAGGAPAWLDAVNLPSGNHSLCD TCGKPLRFVLQVYAPITEKESTYHRTLFVFMCPKMSCLLRDQHEQWKRKPEQPSRRFFVANCLLSIPFTRVRPREMMAGTSHLNLEVVYPLFSVTVVVLG KEINFAVDARKYTTVQKGISASIGNQIISISVAKWKILWSYPTVALLNLVLTTNAFHFTVPTKKLWPEYEIVDEDEAEFGEKLSDDTENAMTLVSMNEKN DSMKSVIDGFKADIDKRTFANFEQRRARAPDQVLRYCRSPTAKPLWPIFSGRLPKADIPSCKYCGGRMIFEFQILSTLLYYFKVDNEVNSLDWATVVVYT CESSCDASVAYKEEFVWVQLH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02220			zinc finger (MYND type) family...		Lus10029718 [exp]	0	1
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10042748 [exp]	2.4	0.7686
AT2G20060			Ribosomal protein L4/L1 family...		Lus10005427 [exp]	4.0	0.7744
AT1G13160			ARM repeat superfamily protein...		Lus10036950 [exp]	6.3	0.8108
AT3G13230			RNA-binding KH domain-containi...		Lus10027099 [exp]	8.7	0.7433
AT5G41190			unknown protein		Lus10008488 [exp]	16.1	0.7581
AT2G29200		APUM1	pumilio 1 (.1)		Lus10001567 [exp]	18.3	0.7300
AT3G15970			NUP50 (Nucleoporin 50 kDa) pro...		Lus10037931 [exp]	21.4	0.7222
AT4G28010			Tetratricopeptide repeat (TPR)...		Lus10033640 [exp]	22.4	0.7139
AT3G55510		RBL	REBELOTE, Noc2p family (.1)		Lus10041417 [exp]	25.7	0.7196
AT5G53770			Nucleotidyltransferase family ...		Lus10008574 [exp]	27.7	0.6514

Compare expression of checked genes

Lus10029718 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.