Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20240 214 / 2e-70 MADS PI, PISTILLATA PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) AT5G23260 137 / 6e-40 MADS ABS, TT16, AGL32 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) AT3G54340 127 / 3e-36 MADS AP3, ATAP3 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) AT4G24540 125 / 2e-35 MADS AGL24 AGAMOUS-like 24 (.1) AT2G22540 125 / 3e-35 MADS AGL22, SVP SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) AT5G15800 122 / 6e-34 MADS AGL2, SEP1 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) AT3G02310 122 / 8e-34 MADS AGL4, SEP2 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) AT1G24260 120 / 3e-33 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) AT3G58780 119 / 6e-33 MADS AGL1, SHP1 SHATTERPROOF 1, AGAMOUS-like 1, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G42830 119 / 7e-33 MADS AGL5, SHP2 SHATTERPROOF 2, AGAMOUS-like 5, K-box region and MADS-box transcription factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042749 [exp] 356 / 6e-126 AT5G20240 219 / 2e-72 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Lus10033187 [exp] 134 / 1e-38 AT3G54340 275 / 4e-94 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) Lus10031960 [exp] 129 / 6e-37 AT3G54340 275 / 5e-94 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) Lus10010630 [exp] 129 / 1e-36 AT3G54340 279 / 1e-95 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) Lus10017388 [exp] 127 / 4e-36 AT5G23260 220 / 4e-72 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10010184 [exp] 127 / 5e-36 AT5G23260 218 / 3e-71 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10034663 [exp] 124 / 3e-34 AT5G15800 267 / 4e-90 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10004638 [exp] 120 / 3e-33 AT3G02310 246 / 2e-82 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10003125 [exp] 117 / 8e-33 AT1G24260 290 / 9e-101 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G182200 [exp] 255 / 2e-86 AT5G20240 244 / 2e-82 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Potri.002G079000 [exp] 249 / 6e-84 AT5G20240 238 / 2e-80 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Potri.012G125600 [exp] 142 / 1e-41 AT5G23260 183 / 2e-57 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.005G118000 [exp] 139 / 1e-40 AT3G54340 226 / 9e-75 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) Potri.015G125501 [exp] 138 / 5e-40 AT5G23260 192 / 6e-61 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.002G028400 [exp] 129 / 3e-37 AT3G54340 229 / 7e-77 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) Potri.007G017000 [exp] 125 / 2e-35 AT3G54340 208 / 1e-67 APETALA 3, K-box region and MADS-box transcription factor family protein (.1) Potri.007G073000 [exp] 124 / 8e-35 AT5G23260 256 / 3e-86 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.004G064300 [exp] 120 / 3e-33 AT4G18960 313 / 8e-109 AGAMOUS, K-box region and MADS-box transcription factor family protein (.1.2) Potri.015G098400 [exp] 119 / 3e-33 AT4G22950 136 / 4e-40 AGAMOUS-like 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10029719 pacid=23152154 polypeptide=Lus10029719 locus=Lus10029719.g ID=Lus10029719.BGIv1.0 annot-version=v1.0 ATGGGTAGGGGGAAGATTGAGATTAAGAGGATAGAGAACGTGAGCAACAGGCAAGTAACTTATTCAAAGAGGAGGAATGGTCTGATCAAGAAAGCCAAAG AGATCACAGTTCTCTGCGATGCTCATGTCTCCCTCATCATCTTCGCCAGCTCCGGCAAGATGCACGACTTCTGCAGCCCCTCCACCACACTGCCTGATAT ACTGGAGAAGTACCACAAGCAGTCTGGGAAAAGGCTGTGGGATGCTAAACATGAGAACCTGAGCAATGAGATTGACAGGATGAAGAAGGAGAATGACAAC ATGCAGATTGAACTCAGGCACCTAAGAGGAGAGGACATAACATCATTAAACTACAAAGAGCTGATGGTTTTGGAGGAAGCGCTGCAGAATGGGATCTCCA GGATCACTGAGCTCCAGAGCGAGTACCGTGACCTCATGAAGAAGAAAGGGAAGATGGCTGAAGATGAGAACAAGCGCCTCAACTTCATCCTGATGCAGCA ACAGCAGCAGGAGGAAGAAATGAAGAGGCTGCAGGGGATGACACTAATGGAAGGATATCACCACCATTCTCATCATAATCATCAACACAGATCTTCTGCT ACTGCTGCTGCTGCTGCTATGAATATGAGGGACAACAACAACAACAACAATAACAGTGATCATCAGATGCCTTTCTCCTTAATTCCAATGCAGCCTAATC TTCATTAG
AA sequence Show only first row Show all	>Lus10029719 pacid=23152154 polypeptide=Lus10029719 locus=Lus10029719.g ID=Lus10029719.BGIv1.0 annot-version=v1.0 MGRGKIEIKRIENVSNRQVTYSKRRNGLIKKAKEITVLCDAHVSLIIFASSGKMHDFCSPSTTLPDILEKYHKQSGKRLWDAKHENLSNEIDRMKKENDN MQIELRHLRGEDITSLNYKELMVLEEALQNGISRITELQSEYRDLMKKKGKMAEDENKRLNFILMQQQQQEEEMKRLQGMTLMEGYHHHSHHNHQHRSSA TAAAAAMNMRDNNNNNNNSDHQMPFSLIPMQPNLH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20240	MADS	PI, PISTILLATA	PISTILLATA, K-box region and M...		Lus10029719 [exp]	0	1
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10026679 [exp]	5.5	0.9991
AT3G18960	B3		AP2/B3-like transcriptional fa...		Lus10027943 [exp]	6.3	0.9848
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10015765 [exp]	7.7	0.9991
					Lus10003757 [exp]	8.3	0.8949
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10005081 [exp]	9.2	0.9808
AT4G27570			UDP-Glycosyltransferase superf...		Lus10013368 [exp]	9.5	0.9991
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Lus10008858 [exp]	10.3	0.8015
AT4G30770			Putative membrane lipoprotein ...		Lus10015689 [exp]	11.0	0.9991
AT4G31880			unknown protein		Lus10026078 [exp]	12.2	0.9597
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000558 [exp]	12.2	0.9991

Compare expression of checked genes

Lus10029719 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.