Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57120 130 / 2e-33 Protein kinase superfamily protein (.1) AT1G51940 67 / 6e-12 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT3G55450 59 / 1e-09 PBL1 PBS1-like 1 (.1.2) AT5G48740 60 / 2e-09 Leucine-rich repeat protein kinase family protein (.1) AT2G37050 60 / 2e-09 Leucine-rich repeat protein kinase family protein (.1.2.3) AT5G54590 59 / 2e-09 CRLK1 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) AT1G69790 59 / 2e-09 Protein kinase superfamily protein (.1) AT4G23160 59 / 3e-09 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G23260 59 / 4e-09 CRK18 cysteine-rich RLK (RECEPTOR-like protein kinase) 18 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 18 (.2) AT5G38560 59 / 5e-09 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016113 [exp] 132 / 8e-34 AT3G57120 447 / 8e-154 Protein kinase superfamily protein (.1) Lus10021451 [exp] 94 / 4e-22 AT3G57120 259 / 4e-85 Protein kinase superfamily protein (.1) Lus10038716 [exp] 98 / 5e-22 AT3G57120 407 / 1e-138 Protein kinase superfamily protein (.1) Lus10027054 [exp] 90 / 1e-19 AT3G57120 213 / 2e-64 Protein kinase superfamily protein (.1) Lus10011518 [exp] 74 / 4e-14 AT3G57120 173 / 6e-49 Protein kinase superfamily protein (.1) Lus10037586 [exp] 74 / 7e-14 AT1G51940 807 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10006841 [exp] 71 / 4e-13 AT1G51940 812 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10011517 [exp] 69 / 2e-12 AT3G57120 182 / 2e-52 Protein kinase superfamily protein (.1) Lus10026689 [exp] 68 / 5e-12 AT1G51940 348 / 4e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G037501 [exp] 118 / 2e-29 AT3G57120 411 / 3e-141 Protein kinase superfamily protein (.1) Potri.010G224900 [exp] 112 / 4e-27 AT3G57120 414 / 2e-142 Protein kinase superfamily protein (.1) Potri.008G037401 [exp] 111 / 6e-27 AT3G57120 371 / 2e-125 Protein kinase superfamily protein (.1) Potri.009G009600 [exp] 96 / 2e-21 AT3G57120 444 / 6e-154 Protein kinase superfamily protein (.1) Potri.001G190200 [exp] 76 / 1e-14 AT1G51940 824 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.015G081601 [exp] 70 / 1e-12 AT1G51940 337 / 5e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.T125208 [exp] 70 / 1e-12 AT1G51940 336 / 9e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128200 [exp] 68 / 5e-12 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.011G131200 [exp] 66 / 2e-11 AT5G54590 631 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Potri.004G026100 [exp] 65 / 5e-11 AT4G23180 662 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10029720 pacid=23152150 polypeptide=Lus10029720 locus=Lus10029720.g ID=Lus10029720.BGIv1.0 annot-version=v1.0 ATGGAGTTCGACGAATTATCAGAGTATGCCAGTTTCCGATCTTTCCCGAGTTACGCTCGCCGGATTCGCCCTGGCAGGCTCCAAAGAATTCCGGCTACAC CCAGAGCCCCAGTTACTCTCAATACTGTCACCTGTTATAGCAGCTTGGACCCTTCTATAGACTCCGGCGTCACCTCCGGGACAACAGCAAGCTGCAGCAA CAGCTACCCAACTACCACCGGATCCTCAAGCAGAACCCCGGACTATCTTTCCGACGCCTCTGCTTCTGCCGACAACTCAATGACTTGTTGGCACAGCAAA TCCGAGTCCGGAATCGGAATCTCCCTCCGGAAGATTCTCCAGTCTCGCGGCAAAGGAAAACCGAGTTCCTTTGGAGGATTATCGTCTCTGATTTCCAGGT GTGACCACATCGGCATAGTCGAGCTCTTGAAATCATCAGTTCCAGACGTAAGAGTCTTCCTGGTTTACAACTTCGTTAGCTCGAAATCCACCGTGGCTAG TCAATTGAGGAAGTCGATGAAGGATCCGAATTCCACCACCGCTCTCACCACATGGATTTCCAGACTGGAAATCGCCGCAGACGTGGCGCGTGGGCTAGAC GACATCCACAATACCAAAGGACTGAGCGGCAGCCTTCTTGGCACGGAAATTGTCAAGAACAGCAGCATCATAATCGTCGAATCAGCGAGCATATCAGGAG ATATTCCGAATCAATTAGAGTACGATCAAATTAGGTTACCGACGGGCGAAGACGAGGAAGTCGACAAAGCTGTAGCCGCGGCGTACCAGAGATCTGATGT CTATGCGTACGGCGGTCTGATACTGGAGCTGATGACAGGGGAGGAGCCGATAGCGACGGTGATCGAGGTGGCGAGGGCGGCGGTGGACGGGAGAGTATTG AAATGGATGTGGACGGACAGGAGGATGGAAGACTGGTTTCCGGAAGATATTACTGAGAAACTGTTGCGGATAGCTGTGAGTTGCCTGAACGAAGACCCCG GAAAGCGGCCGGAGATTGCAAGCGTCGCCGGAAATATATACAGGCTGTGCCTGGAATCGAGGCGGTGGTGTGATGATGCCGGTCGAGAGATGTGGCACGG ACTACACCAGCGCAAGGTGGCCGACGTTTCATTGGCGATGATGATGGACGACATGACCGGTCTGATCAATTGA
AA sequence Show only first row Show all	>Lus10029720 pacid=23152150 polypeptide=Lus10029720 locus=Lus10029720.g ID=Lus10029720.BGIv1.0 annot-version=v1.0 MEFDELSEYASFRSFPSYARRIRPGRLQRIPATPRAPVTLNTVTCYSSLDPSIDSGVTSGTTASCSNSYPTTTGSSSRTPDYLSDASASADNSMTCWHSK SESGIGISLRKILQSRGKGKPSSFGGLSSLISRCDHIGIVELLKSSVPDVRVFLVYNFVSSKSTVASQLRKSMKDPNSTTALTTWISRLEIAADVARGLD DIHNTKGLSGSLLGTEIVKNSSIIIVESASISGDIPNQLEYDQIRLPTGEDEEVDKAVAAAYQRSDVYAYGGLILELMTGEEPIATVIEVARAAVDGRVL KWMWTDRRMEDWFPEDITEKLLRIAVSCLNEDPGKRPEIASVAGNIYRLCLESRRWCDDAGREMWHGLHQRKVADVSLAMMMDDMTGLIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57120			Protein kinase superfamily pro...		Lus10029720 [exp]	0	1
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10002296 [exp]	1.7	0.9237
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Lus10023946 [exp]	2.0	0.9078
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10017693 [exp]	6.9	0.8821
					Lus10023370 [exp]	8.1	0.8872
AT3G12660		FLA14	FASCICLIN-like arabinogalactan...		Lus10024089 [exp]	8.2	0.8159
AT1G11770			FAD-binding Berberine family p...		Lus10023366 [exp]	9.2	0.8924
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10015570 [exp]	11.8	0.8856
AT5G48540			receptor-like protein kinase-r...		Lus10038227 [exp]	12.4	0.8813
AT1G33800			Protein of unknown function (D...		Lus10034373 [exp]	13.7	0.9015
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10041632 [exp]	15.7	0.8411

Compare expression of checked genes

Lus10029720 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.