Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77290 367 / 3e-129 Glutathione S-transferase family protein (.1.2) AT3G62760 58 / 8e-10 ATGSTF13 Glutathione S-transferase family protein (.1) AT1G49860 57 / 3e-09 ATGSTF14 glutathione S-transferase (class phi) 14 (.1) AT2G30870 54 / 2e-08 ERD13, ATGSTF4, ATGSTF10 EARLY DEHYDRATION-INDUCED 13, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 10, glutathione S-transferase PHI 10 (.1) AT1G02920 53 / 3e-08 ATGST11, GST11, ATGSTF8, ATGSTF7 ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 11, glutathione S-transferase 7 (.1) AT1G02930 52 / 4e-08 ATGST1, GST1, ERD11, ATGSTF3, ATGSTF6 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) AT2G30860 52 / 9e-08 GLUTTR, ATGSTF7, ATGSTF9 glutathione S-transferase PHI 9 (.1.2) AT2G02930 51 / 2e-07 GST16, ATGSTF3 GLUTATHIONE S-TRANSFERASE 16, glutathione S-transferase F3 (.1) AT5G17220 51 / 2e-07 GST26, TT19, ATGSTF12 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) AT2G47730 47 / 5e-06 GST6, ATGSTF5, ATGSTF8 Arabidopsis thaliana glutathione S-transferase phi 8, GLUTATHIONE S-TRANSFERASE \(CLASS PHI\) 5, glutathione S-transferase phi 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042756 [exp] 511 / 0 AT1G77290 398 / 2e-141 Glutathione S-transferase family protein (.1.2) Lus10020735 [exp] 74 / 1e-15 AT2G30860 334 / 4e-118 glutathione S-transferase PHI 9 (.1.2) Lus10029815 [exp] 74 / 2e-15 AT2G30860 332 / 2e-117 glutathione S-transferase PHI 9 (.1.2) Lus10020736 [exp] 69 / 6e-14 AT2G30860 308 / 6e-108 glutathione S-transferase PHI 9 (.1.2) Lus10029816 [exp] 65 / 3e-12 AT2G30860 308 / 1e-107 glutathione S-transferase PHI 9 (.1.2) Lus10001419 [exp] 60 / 2e-10 AT2G30860 297 / 3e-103 glutathione S-transferase PHI 9 (.1.2) Lus10004151 [exp] 54 / 2e-08 AT2G30860 194 / 1e-62 glutathione S-transferase PHI 9 (.1.2) Lus10023511 [exp] 54 / 2e-08 AT5G17220 240 / 2e-80 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) Lus10040393 [exp] 50 / 6e-07 AT3G03190 263 / 1e-89 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G182000 [exp] 414 / 8e-148 AT1G77290 414 / 4e-148 Glutathione S-transferase family protein (.1.2) Potri.002G015200 [exp] 56 / 3e-09 AT3G03190 208 / 4e-68 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.002G015100 [exp] 53 / 3e-08 AT3G03190 196 / 2e-63 ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, glutathione S-transferase F11 (.1) Potri.017G138800 [exp] 52 / 5e-08 AT5G17220 265 / 1e-90 TRANSPARENT TESTA 19, GLUTATHIONE S-TRANSFERASE 26, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, glutathione S-transferase phi 12 (.1) Potri.014G132200 [exp] 51 / 1e-07 AT3G62760 295 / 2e-102 Glutathione S-transferase family protein (.1) Potri.002G207672 [exp] 51 / 1e-07 AT3G62760 302 / 2e-105 Glutathione S-transferase family protein (.1) Potri.002G207286 [exp] 43 / 7e-05 AT1G02930 263 / 4e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207479 [exp] 43 / 0.0001 AT1G02930 267 / 1e-91 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2) Potri.002G207093 [exp] 42 / 0.0002 AT1G02930 263 / 5e-90 EARLY RESPONSIVE TO DEHYDRATION 11, ARABIDOPSIS THALIANA GLUATIONE S-TRANSFERASE F3, ARABIDOPSIS GLUTATHIONE S-TRANSFERASE 1, glutathione S-transferase 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10029723 pacid=23151967 polypeptide=Lus10029723 locus=Lus10029723.g ID=Lus10029723.BGIv1.0 annot-version=v1.0 ATGCAGCTATCCCACCATGCTTTCTCCATAGATAGCCAGAAAGTGAGGCTAGCTTTGGAAGAGAAGGGCATTGACTATACTTCAAACCATGTGAATCCTA TAACAACCAAGAATCTGGATGCTTCGTTTTTCAGGATGAATCCTACTGCGAGACTCCCCGTCTTCCAAAATGGTTCCCACATCATCTTCGAGACAATCGA GATAATCCAGTACATTGAAAGAATCGCATTCGTATCCACAGGCGCCAACGACATGCTATTCAGCAACAGAGAAGTTGTTGAATGGATGAAGAAGATACAG AAATGGAACCCCAAGTTCTTTACTCTTTCACATGTCCCGGAAAAATACCGCCTCCACGTCTCCAAGTTCACAAGGCGAGTGCTGATAGCTCGGATGGCCG AATCTTCTGATCTAGCCAGTGCTTACCACCGGAAGCTGAAAGAGACATACGAAACAGTAGAGAAGCTGAAAACTCCGGAAGTTGTGAAACGAAGCACCGA GCACCTAGTTAGACTTCTTGATGAAGTAGAGACCAAGCTAGGGGAAACAGCTTACTTAGCCGGCGAAGACTTCTCGTTGGCAGACGTAATGCTGATCCCT GTGCTTGCGAGGTTGGTACTGCTGAATTTGGAAGACGAGTATATACGAACGAGGCCGAACGTAGCTGAGTACTGGGAAGTGGTGAAGCAAAGACCAAGTT ATAGAAAAGTGATTGGGAAGTACTTCAATGGATGGAGAAGATACAAAACGTTGATGAAAACTTGGTGTTTGGTTCGTTTCAGAAGTCAGTTCAAGATATA CTAA
AA sequence Show only first row Show all	>Lus10029723 pacid=23151967 polypeptide=Lus10029723 locus=Lus10029723.g ID=Lus10029723.BGIv1.0 annot-version=v1.0 MQLSHHAFSIDSQKVRLALEEKGIDYTSNHVNPITTKNLDASFFRMNPTARLPVFQNGSHIIFETIEIIQYIERIAFVSTGANDMLFSNREVVEWMKKIQ KWNPKFFTLSHVPEKYRLHVSKFTRRVLIARMAESSDLASAYHRKLKETYETVEKLKTPEVVKRSTEHLVRLLDEVETKLGETAYLAGEDFSLADVMLIP VLARLVLLNLEDEYIRTRPNVAEYWEVVKQRPSYRKVIGKYFNGWRRYKTLMKTWCLVRFRSQFKIY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77290			Glutathione S-transferase fami...		Lus10029723 [exp]	0	1
AT4G22200		AKT3, AKT2/3	potassium transport 2/3 (.1)		Lus10019944 [exp]	2.4	0.8930
AT5G66440			unknown protein		Lus10042306 [exp]	3.9	0.8945
AT3G47570			Leucine-rich repeat protein ki...		Lus10030630 [exp]	7.3	0.8849
AT5G18610			Protein kinase superfamily pro...		Lus10041426 [exp]	8.1	0.8611
AT1G77290			Glutathione S-transferase fami...		Lus10042756 [exp]	9.8	0.8593
AT4G38225			unknown protein		Lus10026560 [exp]	13.3	0.8788
AT4G09620			Mitochondrial transcription te...		Lus10028701 [exp]	17.0	0.8285
AT4G27610			unknown protein		Lus10043458 [exp]	18.0	0.8565
AT2G36650			unknown protein		Lus10014389 [exp]	22.0	0.8781
AT4G34560			unknown protein		Lus10026353 [exp]	22.4	0.8366

Compare expression of checked genes

Lus10029723 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.