Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07590 692 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G15480 168 / 2e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80270 167 / 8e-45 PPR596 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) AT4G02820 133 / 2e-33 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G60770 126 / 5e-31 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G15590 117 / 8e-28 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G01990 112 / 2e-26 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02150 110 / 9e-26 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02370 108 / 9e-25 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20710 103 / 2e-23 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042757 [exp] 1051 / 0 AT1G07590 696 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012112 [exp] 172 / 1e-46 AT1G80270 659 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Lus10031004 [exp] 167 / 8e-45 AT1G80270 532 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Lus10010430 [exp] 158 / 1e-41 AT1G80270 651 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Lus10042574 [exp] 142 / 2e-36 AT4G02820 565 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022033 [exp] 120 / 1e-29 AT4G02820 468 / 9e-163 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021053 [exp] 118 / 4e-28 AT1G02370 494 / 3e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013047 [exp] 117 / 4e-28 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009787 [exp] 112 / 3e-26 AT1G02150 600 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G030900 [exp] 780 / 0 AT1G07590 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G039600 [exp] 172 / 2e-46 AT1G80270 654 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Potri.016G036100 [exp] 160 / 3e-42 AT1G80270 634 / 0.0 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Potri.005G208900 [exp] 145 / 7e-38 AT4G02820 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G193600 [exp] 142 / 2e-36 AT1G80270 442 / 9e-149 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3) Potri.006G157400 [exp] 124 / 1e-30 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G079600 [exp] 120 / 5e-29 AT1G60770 701 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G132500 [exp] 114 / 5e-27 AT2G20710 388 / 4e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G063300 [exp] 113 / 1e-26 AT2G20710 345 / 1e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G132700 [exp] 110 / 1e-25 AT2G20710 387 / 2e-130 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10029724 pacid=23152087 polypeptide=Lus10029724 locus=Lus10029724.g ID=Lus10029724.BGIv1.0 annot-version=v1.0 ATGCGTGTGTTGGCTCTATTGGGTCAGCGTATGTTCTTTCAAGCAGTTGATCGAACAATCTCCATCGCCCGCATTCCCCTCTGCAGTGCTCCTTACTGTA TTGCATCTCTCAACAGTGAGGCAACAACTAATGTTTCCTTGGAAAAGATTTCGGGAGCACAGGTTCAGGTTGATCAACCTACTTGTCTATCCTTTAGAAT CGAGAAGCTTCCAAGGGGAGTTCCTGTTGTATCTGCCTTCCAAAGCTGGATGGGCGAGGGGTTACCGGTTCACAGAGGAGATATCTTCCATGCTATTAAC CGACTTCGGAAGCTCAACATGAACAAACGTGCCCTTGAGGTGATGGAGTGGATAATAAGGGAGAGACCATACAGCCCAAAGGAACTTGACTACTCGTATT TGTTGGAATTTACTTGCAAGCTACATGGGATACCCCATGCTGAGAAGCTATTCCCTCGTGTGCCGCCTGAGTTCCAGAACGAATTGCTTTACAACAATCT CGTGATTGCATGCTTGGACAAAGGTGTCTTGAGGCTCTCACTTGAATACATGAAAAGGATGAGGGAACTGGGACATCACATTTCGTACTTGGTCTTCAAT CGCCTTATTATCCACCTTGCTACCCCTGGTCGGAGAAAATCGATCCCGAAACTCCTTTCTCAAATGAGGGCAGATAAAGTTGCCCCCCACGCCTCAACTT ACAACATCCTGATGAAAATGGAAGCCAGCGAACACAACATAGAAGGGTTGCTCAAGGTATTTACAGATATGAAACGATCAGAGGTAGAACCGAATGAAAT ATCATTCTGCATATTGGCCATCGCTCATGCTGTGGCAAGATTGTATACTGCTGCTCAAGAATATGTTGAAGCTGTGGAGAAGACCCGTACGGGGAAAAAT TGGTCAACACTTGATGTTTTGATCATGTTATATGGGTATTTAGGGAAGGAGAAAGCGCTGGAGAGAACTTGGGGCAGTGTGCAACAGCTTGAAAATATTA GGTCCAAGAGTTACATACTTGCAATTGAAGCCTTTGGTAGAATTGGGCGGATCGATCGCGCAGAGGAGCTGTGGTTAGAGATGAAGTCACTGAAAGAGCT AAATTTGACTGAGCAGTTCAATTCGATCTTATCCGTTTACTGCAGACACGGGCGGATAAAAAAGGCGACTGCCATTTTCAGGGAAATGGAGGCTAGGGGG TGCAAGGCGAATGCCATAACTTTTCGACATCTTGCTTTGGGTTGTTTGAAAGCCGACTTGGTGGAAGAATCATTGAAGACGCTGGAGATGGGATCGAAGC TCACAGCTACGAGGAAGGTTAGGAACTCCACGCCGTGGCTGGAGACTAGTCTTTCCCTGGTTGAAATTTTTGCAGAGAAAGGTGATGTGGTGAATGCTGA AAAGTTGTTTGAAGAACTGAGCAAGGCTAAGTATATAAGATATACGTTTGTGTACAATACTCTTATTAAAGCTTATGTGAAGGCTAGAATTCACAATCCT AATCTATTAAGGAGAATGATTTTAGGGGGTGCAAGGCCAGATGCTGAGACCTATAGTCTGTTGAAACTTGCTGAGCAGCTCAGTAACTGA
AA sequence Show only first row Show all	>Lus10029724 pacid=23152087 polypeptide=Lus10029724 locus=Lus10029724.g ID=Lus10029724.BGIv1.0 annot-version=v1.0 MRVLALLGQRMFFQAVDRTISIARIPLCSAPYCIASLNSEATTNVSLEKISGAQVQVDQPTCLSFRIEKLPRGVPVVSAFQSWMGEGLPVHRGDIFHAIN RLRKLNMNKRALEVMEWIIRERPYSPKELDYSYLLEFTCKLHGIPHAEKLFPRVPPEFQNELLYNNLVIACLDKGVLRLSLEYMKRMRELGHHISYLVFN RLIIHLATPGRRKSIPKLLSQMRADKVAPHASTYNILMKMEASEHNIEGLLKVFTDMKRSEVEPNEISFCILAIAHAVARLYTAAQEYVEAVEKTRTGKN WSTLDVLIMLYGYLGKEKALERTWGSVQQLENIRSKSYILAIEAFGRIGRIDRAEELWLEMKSLKELNLTEQFNSILSVYCRHGRIKKATAIFREMEARG CKANAITFRHLALGCLKADLVEESLKTLEMGSKLTATRKVRNSTPWLETSLSLVEIFAEKGDVVNAEKLFEELSKAKYIRYTFVYNTLIKAYVKARIHNP NLLRRMILGGARPDAETYSLLKLAEQLSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07590			Tetratricopeptide repeat (TPR)...		Lus10029724 [exp]	0	1
AT3G27220			Galactose oxidase/kelch repeat...		Lus10014602 [exp]	2.4	0.8731
AT2G02850		ARPN	plantacyanin (.1)		Lus10041850 [exp]	5.2	0.8943
AT2G40280			S-adenosyl-L-methionine-depend...		Lus10017436 [exp]	10.7	0.8723
					Lus10003030 [exp]	10.8	0.8213
AT1G66120			AMP-dependent synthetase and l...		Lus10031366 [exp]	19.0	0.8576
AT5G55410			Bifunctional inhibitor/lipid-t...		Lus10016582 [exp]	20.0	0.8103
AT3G13228			RING/U-box superfamily protein...		Lus10025671 [exp]	22.3	0.7722
AT2G43970			RNA-binding protein (.1.2)		Lus10025608 [exp]	23.1	0.8647
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10007874 [exp]	29.8	0.8216
AT5G08060			unknown protein		Lus10017854 [exp]	33.2	0.8349

Compare expression of checked genes

Lus10029724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.