Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06240 75 / 2e-14 F-box family protein (.1) AT1G47790 62 / 2e-10 F-box and associated interaction domains-containing protein (.1) AT3G16210 61 / 5e-10 F-box family protein (.1) AT4G04690 57 / 8e-09 F-box and associated interaction domains-containing protein (.1) AT2G40910 57 / 1e-08 F-box and associated interaction domains-containing protein (.1.2) AT3G08750 54 / 9e-08 F-box and associated interaction domains-containing protein (.1) AT3G22350 51 / 6e-07 F-box and associated interaction domains-containing protein (.1.2) AT3G10240 51 / 6e-07 F-box and associated interaction domains-containing protein (.1) AT4G12560 51 / 8e-07 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G24700 49 / 2e-06 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027824 [exp] 246 / 2e-77 AT3G06240 78 / 2e-15 F-box family protein (.1) Lus10042758 [exp] 156 / 9e-45 AT4G37925 173 / 1e-53 NADH dehydrogenase-like complex M, subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex (.1) Lus10001105 [exp] 140 / 3e-37 AT3G06240 109 / 3e-26 F-box family protein (.1) Lus10027780 [exp] 124 / 1e-32 AT3G23880 60 / 6e-10 F-box and associated interaction domains-containing protein (.1) Lus10023372 [exp] 122 / 1e-30 AT3G16210 67 / 5e-12 F-box family protein (.1) Lus10018008 [exp] 112 / 5e-27 AT3G16210 82 / 6e-17 F-box family protein (.1) Lus10015408 [exp] 112 / 9e-27 AT3G16210 64 / 6e-11 F-box family protein (.1) Lus10028961 [exp] 105 / 9e-25 AT4G12560 81 / 2e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10009424 [exp] 105 / 1e-24 AT3G06240 73 / 9e-14 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G137200 [exp] 84 / 3e-17 AT3G07870 94 / 1e-20 F-box and associated interaction domains-containing protein (.1) Potri.008G215901 [exp] 82 / 1e-16 AT3G07870 103 / 3e-24 F-box and associated interaction domains-containing protein (.1) Potri.008G215800 [exp] 81 / 1e-16 AT3G07870 101 / 3e-23 F-box and associated interaction domains-containing protein (.1) Potri.017G012200 [exp] 81 / 2e-16 AT4G12560 86 / 4e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G318400 [exp] 80 / 2e-16 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.006G170300 [exp] 79 / 1e-15 AT4G12560 69 / 1e-12 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.005G114900 [exp] 77 / 5e-15 AT3G21410 73 / 9e-14 F-box and associated interaction domains-containing protein (.1) Potri.008G199800 [exp] 75 / 1e-14 AT3G23880 182 / 3e-53 F-box and associated interaction domains-containing protein (.1) Potri.012G099733 [exp] 73 / 5e-14 AT3G16210 92 / 2e-20 F-box family protein (.1) Potri.001G318300 [exp] 73 / 7e-14 AT3G06240 140 / 7e-38 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029725 pacid=23151985 polypeptide=Lus10029725 locus=Lus10029725.g ID=Lus10029725.BGIv1.0 annot-version=v1.0 ATGGCGAGAGAAGGAAACACCATCCAACTCTGCGGCGACGGCGGCGGATGTCGGTTTCCAGAGGAACTCGTGATCGAAATCCTGAAACGGCTCCCCACTG CAACCTGCATCGGACGCTTCCGCTGCGTCAGAAAATCATGGTACCATCATCTCTCCGACCCCAATTTCGTACGCAGCCAGAATCGTGATCACACAACTAG GGTTATGATCACGAGTAGTTCCAATTTTAAAGAAGTCGGGCGGAGGAATTGCAACAATGCAGAGGCGACCACGATCTCCTACGACACTCTCCAGCCTACC TCACCAGAGTCTTTGCTTAAGCGCTTAGTTCCGGAAGTAAAGTTACTCCAATACGAATCGCCAACAATCGGTGGTTGCTGTGATGGTATATTCTGTTTAT ACGAAACTCATCTCGATTCCAAAGTTATTATCTGGAACCCAACTACCTCAGATCGACTAGCCTTGCCCTTGCTGGACTACGCGCTGTACACTGAACATTT ACAGGTACAGCCGCAGGTTAGGCAAATCGGATTCGCATTCGACCCCAAAACCAACGATTACAAGGTCGTTATCGTAATCGGACCGGCCCAATCCTCCCTT GGAACGGATCTGCCCGCGTACATCTACAGCCTGAAGAATGGTTCGTGGAAGCCGATTCAGAGTCGATGCTACGATACTGGAACTGAGGTTGTCAAGTCTG ATAGGATTAACAAGTGCTACTGGTTTTGCTCGGGTTCGACATGGTCGATCAATGAATTTGACATGAGCGAGGAAGCTTTCAACAAGGTTGCGCTGCCACC GGAGCCTGAACATGCTGATTTAAAGCAGTCGTGTATGTACATGTTCAAGAACTCGTTGATGGCTATCTCTGGAGGCAGTATATGGAGGGTGTTGAACTAC GACAAGCTTGAATGTGGATGGGAGAAATTGTTTAGCATTGGGGATGCTAGTTTTGTGACGGAAGTCAAGGATATTCGTGCAGTAATGTGGGAAGAGGGAA GATGGTTCGTGGTGGATTCAGAGGGATTGCAGGTTATTGATGTGAAGGAAGAGGATTGCTACAGGAATCGTAAGATGGTGAGTAAATGGGTTGTCTGTCA AGTTAGAGCTTATATACCATCCCCATTGTCCCTGAAACATTTCTATTGGAGCATTCATGAATCAGATATGCTGGAAGGAGATTGTGGTGATTCTGTTTTT CTACAGGTGCAGTGCAGCTGCTCAATTTGA
AA sequence Show only first row Show all	>Lus10029725 pacid=23151985 polypeptide=Lus10029725 locus=Lus10029725.g ID=Lus10029725.BGIv1.0 annot-version=v1.0 MAREGNTIQLCGDGGGCRFPEELVIEILKRLPTATCIGRFRCVRKSWYHHLSDPNFVRSQNRDHTTRVMITSSSNFKEVGRRNCNNAEATTISYDTLQPT SPESLLKRLVPEVKLLQYESPTIGGCCDGIFCLYETHLDSKVIIWNPTTSDRLALPLLDYALYTEHLQVQPQVRQIGFAFDPKTNDYKVVIVIGPAQSSL GTDLPAYIYSLKNGSWKPIQSRCYDTGTEVVKSDRINKCYWFCSGSTWSINEFDMSEEAFNKVALPPEPEHADLKQSCMYMFKNSLMAISGGSIWRVLNY DKLECGWEKLFSIGDASFVTEVKDIRAVMWEEGRWFVVDSEGLQVIDVKEEDCYRNRKMVSKWVVCQVRAYIPSPLSLKHFYWSIHESDMLEGDCGDSVF LQVQCSCSI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06240			F-box family protein (.1)		Lus10029725 [exp]	0	1
AT1G77130		PGSIP2, GUX3	glucuronic acid substitution o...		Lus10018922 [exp]	41.7	0.6652
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Lus10023601 [exp]	156.7	0.6013
AT4G18590			Nucleic acid-binding, OB-fold-...		Lus10022705 [exp]	160.8	0.5921
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10024230 [exp]	183.3	0.5858
AT4G10750			Phosphoenolpyruvate carboxylas...		Lus10000223 [exp]	255.3	0.5743

Compare expression of checked genes

Lus10029725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.