Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55490 528 / 0 GEX1, ATGEX1 gamete expressed protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002182 [exp] 989 / 0 AT5G55490 579 / 0.0 gamete expressed protein 1 (.1) Lus10039900 [exp] 979 / 0 AT5G55490 575 / 0.0 gamete expressed protein 1 (.1) Lus10042450 [exp] 776 / 0 AT5G55490 541 / 0.0 gamete expressed protein 1 (.1) Lus10026220 [exp] 240 / 2e-74 AT2G44300 131 / 6e-37 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10001735 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G137100 [exp] 693 / 0 AT5G55490 579 / 0.0 gamete expressed protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029726 pacid=23152098 polypeptide=Lus10029726 locus=Lus10029726.g ID=Lus10029726.BGIv1.0 annot-version=v1.0 ATGGCTTACCAGTATGAACATCATCTTGTGCTGATGCTCCTTGTTCTGATCATATCCACTTCCGGTTGCCAGTCATGGGGATGGTTCTCTTCTTCTTCCG GGGATGATTCCGGAAATGATGAGTACCGTTTTTCTGGGGCGGCGGTGGCCGATTTTTCATTGGATTTTCCTGCAGATAATAAAGGATTAGTAGAAAAGGC AAGGAACAAGCTAGTTGGTTCCAACACTTGCTGGCAGAATGCTTACCACCACATCTTTACCGGATGCACTCAAATAAACGCCAACGAAGACAAACGCAAG AGATTCGCTTGGCATCTAAGCGATTGCTTCCAGAAGGATTCTGGGAGGCAGCCTTTCCCCAACTGCGACGAGAAATCTGCCATCTTCCATTGCCTGAAGA AGTTGGACGATCATGAACACAAGGTTTATCTCGAGTTTTTCACTGAAACCAATTCCATCTGCTACCAACTACAGGTGCATGCATTCAAACACGAGACGGA GAGGCTGGTGAATGAGCTTAAAAGTTCAGCGCAATACACTGAGCAACAACTGGAGACTATTAAGGACAGAACGGTCACGGTACTGCACAACTCGAATCAG ATCCACGATTCGTTGAGTTCGGTGGATGATAAAGTTCAGCGCGTGATTCAGACGAGTAAAGGAGTGGAGGTTCAGATTGATACCTTGTCTAAGCAGTCTG ACGCTGTTTATAAACAATCGGAGGATATCATTAGGTCACAGACGGAACTGCAAGCGGGACAAGAAAAGATGAATGAGAATTTGAAACAAGGGGTGACGAT GCTTCAAGATGCTTACAGTAATTTGGGGGAGGAAGTGAGCAACCTGAGGAATGAGGCTGTTCAGATAGAGAAGCAGATTGATAGAGTTGGGGAATCGATG TCTTCAAAGTTTCGGAATCTGCAGAGCAAAGCTGATGATATCGAAAACATGGCGGGGAGTTCGTTGAGCAAGCAACAACAACTTCTGGATGGACAGTCCA CAGCGCTTAAAGGTCTCGATAGCTTGACGGAATCTCAATCTGTAGCGCTCGACGAAAGCAGGAATGCAATGCGACATTTGGCTGATTTAGGTCGTCAACA GCAGGAAGAGCTTCTTCAAAGGCAGAAACAGCTACAACAAGTTCATGATCACTTAGTCTCGAATTCGAAATCGATATTGGAAGCACAGGAAGCGTTTGAG GTGAAGCAAGCAAGCATGTTTATTGCTCTAGACAACCTGTTCGAACTACACAACGCAATGTTGCTCGAATCGCGAGTATTCAAGGCTTTCTTCATCTACA CCATGTCAATTTTCATCATCTACATGTTTACCAGTACAAAGCAGACATATCCAGTCAGAGCCAATCTCTATCTAGGGTTGTGTACTACGTTCCTCGTAGA AGTAGCAATCATTCGGCTTACACCAAGTGACCTAGAGCGACAAACCTGGATGATTAATCTGGTCAGGTTGCTCTTATCTTTCCTGGCGATTCTTCAGATC CTTTATGCCATTTACACGTACAGGGACTATGAAGTATTGAATCATCGGATGATCCTGACATTGACGGAAAAAATCAATTCGTTGCAAAGAAGTAAAGAGA TGTCATGGGATAGCGATAGTGAAGTGGACTGGTCGACATGGGTTGAAGACGAGTTACCAGAAGAAGTTGCCAGTTCGGAGGATCCTGACTACATGATTCC AGAAGAAGCTGCTGATAGATCGATTTTGAGCGTTCCGGTGATGAGAAAGTACGATCTCCGTCAACGCAACCGTTTGAGCTAA
AA sequence Show only first row Show all	>Lus10029726 pacid=23152098 polypeptide=Lus10029726 locus=Lus10029726.g ID=Lus10029726.BGIv1.0 annot-version=v1.0 MAYQYEHHLVLMLLVLIISTSGCQSWGWFSSSSGDDSGNDEYRFSGAAVADFSLDFPADNKGLVEKARNKLVGSNTCWQNAYHHIFTGCTQINANEDKRK RFAWHLSDCFQKDSGRQPFPNCDEKSAIFHCLKKLDDHEHKVYLEFFTETNSICYQLQVHAFKHETERLVNELKSSAQYTEQQLETIKDRTVTVLHNSNQ IHDSLSSVDDKVQRVIQTSKGVEVQIDTLSKQSDAVYKQSEDIIRSQTELQAGQEKMNENLKQGVTMLQDAYSNLGEEVSNLRNEAVQIEKQIDRVGESM SSKFRNLQSKADDIENMAGSSLSKQQQLLDGQSTALKGLDSLTESQSVALDESRNAMRHLADLGRQQQEELLQRQKQLQQVHDHLVSNSKSILEAQEAFE VKQASMFIALDNLFELHNAMLLESRVFKAFFIYTMSIFIIYMFTSTKQTYPVRANLYLGLCTTFLVEVAIIRLTPSDLERQTWMINLVRLLLSFLAILQI LYAIYTYRDYEVLNHRMILTLTEKINSLQRSKEMSWDSDSEVDWSTWVEDELPEEVASSEDPDYMIPEEAADRSILSVPVMRKYDLRQRNRLS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55490		GEX1, ATGEX1	gamete expressed protein 1 (.1...		Lus10029726 [exp]	0	1
AT5G41150		ATRAD1, UVH1	ULTRAVIOLET HYPERSENSITIVE 1, ...		Lus10000998 [exp]	2.0	0.6816
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10035919 [exp]	13.6	0.5777
AT1G18530			EF hand calcium-binding protei...		Lus10038953 [exp]	57.1	0.5581
AT1G77320		MEI1	meiosis defective 1, transcrip...		Lus10028668 [exp]	60.9	0.5173
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10000022 [exp]	64.5	0.6022
AT4G12490			Bifunctional inhibitor/lipid-t...		Lus10024623 [exp]	65.9	0.5464
AT2G01730		ATCPSF73-II, ED...	embryo sac development arrest ...		Lus10035763 [exp]	116.2	0.5648
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10001037 [exp]	118.6	0.5330

Compare expression of checked genes

Lus10029726 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.