Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37925 231 / 2e-77 NdhM, NDH-M NADH dehydrogenase-like complex M, subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029727 [exp] 276 / 5e-96 AT4G37925 172 / 6e-55 NADH dehydrogenase-like complex M, subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex (.1) Lus10042759 [exp] 272 / 8e-95 AT4G37925 207 / 3e-69 NADH dehydrogenase-like complex M, subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex (.1) Lus10042758 [exp] 268 / 5e-91 AT4G37925 173 / 1e-53 NADH dehydrogenase-like complex M, subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G183000 [exp] 267 / 8e-92 AT4G37925 244 / 2e-82 NADH dehydrogenase-like complex M, subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex (.1) Potri.002G077600 [exp] 201 / 4e-66 AT4G37925 198 / 1e-64 NADH dehydrogenase-like complex M, subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10664 [flax] [poplar] NdhM Cyanobacterial and plastid NDH-1 subunit M
Representative CDS sequence Show only first row Show all	>Lus10029728 pacid=23152162 polypeptide=Lus10029728 locus=Lus10029728.g ID=Lus10029728.BGIv1.0 annot-version=v1.0 ATGGCAGCTTCTTCATCTTACCTTACCTTTTCCACAGTGAGTATGCTCGGAAATCGTAGCGCAAGGCAGCTCAGAAACAGGAGTGTAGTTTCAGTTTCAG CACAACCGCAAGAAGCTCAGGTCCAGGAAACACAGGAGGAGGAGGAGAAGAACGACCAAAAACAAGAGATCACCACTCCAGCAAAGCAGTCCACGAGACC GAGACCCGTGGAGAAACAAATAAATGTGCAAAACAAGAACATGACCAGAGAGTATGGAGGGCAGTGGCTCAGCAGCACCACCCGCCACGTTAGGATCTAC GCTGCCTACATTGATATCGAGACTGAAACTATGGATCAAACCCAGATGGATAAGCTCACTATCATCCTTGATCCCACCGACGAGTTTCTCTGGAACGACG AGACCACCACCAAGGTGTACTCTTACTTCCAGGAGCTTGTCGATAACTACGAGGGAGCTCCATTAACAGAGTACACGCTACGACTAATCGGTTCAGACAT CGAACACTACATAAGGAAGCTGCTGTATGCTGGAGAAATCAAATACAACATGAGGGCAAAGACGCTCAACTTCAGCATGGGGAAACCGAGGATCCTATTT AATGATGAGGAGAGTCCTGATGTACAATGA
AA sequence Show only first row Show all	>Lus10029728 pacid=23152162 polypeptide=Lus10029728 locus=Lus10029728.g ID=Lus10029728.BGIv1.0 annot-version=v1.0 MAASSSYLTFSTVSMLGNRSARQLRNRSVVSVSAQPQEAQVQETQEEEEKNDQKQEITTPAKQSTRPRPVEKQINVQNKNMTREYGGQWLSSTTRHVRIY AAYIDIETETMDQTQMDKLTIILDPTDEFLWNDETTTKVYSYFQELVDNYEGAPLTEYTLRLIGSDIEHYIRKLLYAGEIKYNMRAKTLNFSMGKPRILF NDEESPDVQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37925		NdhM, NDH-M	NADH dehydrogenase-like comple...		Lus10029728 [exp]	0	1
AT4G37925		NdhM, NDH-M	NADH dehydrogenase-like comple...		Lus10029727 [exp]	1.0	0.9949
AT1G73110			P-loop containing nucleoside t...		Lus10041627 [exp]	1.4	0.9691
AT4G25170			Uncharacterised conserved prot...		Lus10009654 [exp]	2.4	0.9533
AT1G18730		PnsB4, NDF6	Photosynthetic NDH subcomplex...		Lus10021662 [exp]	3.0	0.9651
AT3G14420			Aldolase-type TIM barrel famil...		Lus10005590 [exp]	4.0	0.9566
AT3G55250		PDE329	PIGMENT DEFECTIVE 329, unknown...		Lus10022229 [exp]	4.9	0.9419
AT1G64770		PnsB2, NDH45, N...	Photosynthetic NDH subcomplex...		Lus10010671 [exp]	5.9	0.9563
AT1G76450			Photosystem II reaction center...		Lus10030719 [exp]	6.9	0.9524
AT1G18730		PnsB4, NDF6	Photosynthetic NDH subcomplex...		Lus10001645 [exp]	7.5	0.9531
AT2G03420			unknown protein		Lus10037118 [exp]	8.0	0.9373

Compare expression of checked genes

Lus10029728 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.