Plant FIBer expression Database

Lus10029729 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G77270 69 / 9e-12 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042760
[exp]
246 / 9e-78 AT1G77270 55 / 2e-09 unknown protein
Lus10038311
[exp]
44 / 0.0003 AT1G77270 46 / 3e-05 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G077500
[exp]
71 / 3e-12 AT1G21560 98 / 4e-22 unknown protein
PFAM info
Representative CDS sequence
>Lus10029729 pacid=23152051 polypeptide=Lus10029729 locus=Lus10029729.g ID=Lus10029729.BGIv1.0 annot-version=v1.0
ATGGTTGTGGGTCGTACAAGGATGCATCTGAAAAGAAAAGCTAGGGAGCTCGATTTACTGATCGATGAAATGCTGTACCACCCAACTCCGGAGGGGAAAA
TGCGGAGAAAGACTAGGTCTAGTCCAAGGCTAAAGAGAATAAACCCTAGCTTTCATGCAAGCGTTCAAGCTCCACCAACGAGGACGCCACCAGCTATGGA
GATGTTAATTGCAACGCTGGACGCAAGGACAACGAAGATGGTGCAGAGAAAGAAGACACGCCGGACCACTGACGACGATCAAGAGGATGAATTCGCCCCT
GATCCAGATTACATCAAATTCTTGACTGGGTTGGGTCTAGGCCTTCCTCTGTCCACTAACGTATTCCATGCAGGTGATAAAGCCGGTGGTAGTTTGAGGA
AAAATCGCCATGAGCTTCCTATTTTGGAGAAGGATGATGATGAGTCTGTGGACGAGGATCTTAAAGAGATTCTGGTGGGAGATTCTGCTTTTGTTGACCT
CCACGCTGATGATGCTGTCGTTGATTATCTAACGAATGATGCTACTGACAACTATATGACCGAGGACAAAGTCGCGGTTGGCCAATCTGTACAAGGAATG
CTGGTTGATTCCGAGTCTGAAGAGGAAGCCATCAATGTCGATACTTCTCCTGCTCCTGACAAGGAGGCTGGTGTGAGGGATGGTGCTGACGATGATATTA
TTGATATGACTTTGGACAATGCAGCTGTTTCTGAAGAAGCTACAGATGGTTGCAATGATTTTAATGATGTTCCCTTGAACAAAAATCAGAGCGTTGTTGA
TGCTGATTACAGAATGTTCTTAGAGAATGTGACTCCGCATGGGGGTTCTTTCATGCTGAAACTCTCTTTCGACAATGGTCAGCCGCCTATAACTTGTTTG
TACGAGGAAGATGACACTGAGAATCAGGAGACGAGATGCCCTTCTTTGCGGATGAACAATGGAGAGTTTGAGAGACCTCCTGACCCAGCATGCGGTGGAA
ATCCAGGTGATTGTGGAGCTGATGAAGTTGATGTTAGATGCCATCCAAGAGTCCATGATGAAAACATGGAGGCTTCATTCGTTGCTAGGAAAGTCGTTAA
TAAAAGGGATAAAATGCAAGGTGTTGGAGTAAGTGAGAAGACTTCTAGGAACGGGAAGCGAAAAGAGACAGCGGTTGCTGCTGAAAACTCGCAAGCTCGA
GCGACAAGGGACAAATGTATCAGAAACGAGACAGAAGTTGGAACAGAAAACATGGAGGCTTCGTTCGCTGCTAGGAAATTCTCCAACAAAAGGGATAAGA
TGCAAGGTGTTGGAGTAAGTGAGAAGATTTCTAGAATGCGGAAGCGAAAAGAGACAGCAATTGCTGCTGAAAACTCGCAAGCTCGAGCGGCAAGGGACAA
ATATGTCAGAAAGGAAACAGAAGTTGAAACAGAAAATCAACGTCGCGCAGAGAAAGTTCCGATTTTGATGTCAGTGAAGCAGGAGATAGCAGACGAAAGT
TCCAAAGAGGTTATGGAATCTAGTCTGGTGAAGAAAAGAAGAAGGGAAACACGTACTTGCTCAAATGGACAGATTCTGAAAGCTCGCAGCAACGATGCTT
GGCAGACACTGGAAACCCGCAAAGATGCGAGGCAGACTCAGGATTGCAGAAGAGCTCCTCCGGTTATAGGTCCAATAGGGCAGCCTAAAGCTGATAAATG
CTATGAAACATTTCTCAGCGGTTTGACTATAAATCAGACGCATCTAGAATTCAAAGCTGCAGCTGGTGAAATTGTGGTGTATGATGATTATACCAGCATT
TCATCCGATTCAGATGTGGAGGAGATTGATGCTGCCACGTTTGCAACCAACACTGGTACTCCATTCGTGGCATCAAAGCTCCCTGAGATAATCGATCTTG
AGGCTGAACCTGAACGTCCTATTCGGGATTTCGATTCCGAGTTCAGTGTAAAGCTCATTGCACTTCTTAGAAAGCCGTTCAACAAGAAGGAGTATGATGA
TCTGATGGAAGAAGTATATGCGAAGAAGCAGAAGACTAAAGAACAGTTGCTCCGGGGAAGGTCAAAGATGGTCAAAGTGGAAGGTGTTTTTGACAAATCT
TATATCGAGCAGCATGAGGATTTCGCCACCGTGCTCGAAAACCTGAAGGCTAAAGTCGAAAGCAATCGCCCTGTGAGGCTGAATCTATTGCGTGGATTTT
GCTATTGGTTGGGGGTCAGTGTCTTTTCTTGCTCTCAACTCCTGTCTTATGCTTGCCAAAGCTAA
AA sequence
>Lus10029729 pacid=23152051 polypeptide=Lus10029729 locus=Lus10029729.g ID=Lus10029729.BGIv1.0 annot-version=v1.0
MVVGRTRMHLKRKARELDLLIDEMLYHPTPEGKMRRKTRSSPRLKRINPSFHASVQAPPTRTPPAMEMLIATLDARTTKMVQRKKTRRTTDDDQEDEFAP
DPDYIKFLTGLGLGLPLSTNVFHAGDKAGGSLRKNRHELPILEKDDDESVDEDLKEILVGDSAFVDLHADDAVVDYLTNDATDNYMTEDKVAVGQSVQGM
LVDSESEEEAINVDTSPAPDKEAGVRDGADDDIIDMTLDNAAVSEEATDGCNDFNDVPLNKNQSVVDADYRMFLENVTPHGGSFMLKLSFDNGQPPITCL
YEEDDTENQETRCPSLRMNNGEFERPPDPACGGNPGDCGADEVDVRCHPRVHDENMEASFVARKVVNKRDKMQGVGVSEKTSRNGKRKETAVAAENSQAR
ATRDKCIRNETEVGTENMEASFAARKFSNKRDKMQGVGVSEKISRMRKRKETAIAAENSQARAARDKYVRKETEVETENQRRAEKVPILMSVKQEIADES
SKEVMESSLVKKRRRETRTCSNGQILKARSNDAWQTLETRKDARQTQDCRRAPPVIGPIGQPKADKCYETFLSGLTINQTHLEFKAAAGEIVVYDDYTSI
SSDSDVEEIDAATFATNTGTPFVASKLPEIIDLEAEPERPIRDFDSEFSVKLIALLRKPFNKKEYDDLMEEVYAKKQKTKEQLLRGRSKMVKVEGVFDKS
YIEQHEDFATVLENLKAKVESNRPVRLNLLRGFCYWLGVSVFSCSQLLSYACQS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G77270 unknown protein Lus10029729
[exp]
0 1
AT2G26330 QRP1, ER QUANTITATIVE RESISTANCE TO PLE... Lus10038071
[exp]
4.5 0.9320
AT1G67040 unknown protein Lus10017607
[exp]
5.8 0.9310
AT2G05760 Xanthine/uracil permease famil... Lus10030014
[exp]
7.7 0.9237
AT3G21100 RNA-binding (RRM/RBD/RNP motif... Lus10005023
[exp]
7.7 0.9264
AT1G75310 AUL1 auxilin-like 1, auxin-like 1 p... Lus10033205
[exp]
7.7 0.9146
AT5G13150 ATEXO70C1 exocyst subunit exo70 family p... Lus10011334
[exp]
8.4 0.9230
AT4G39790 Protein of unknown function (D... Lus10024039
[exp]
9.2 0.9098
AT5G18750 DNAJ heat shock N-terminal dom... Lus10012795
[exp]
11.0 0.8987
AT2G42840 PDF1 protodermal factor 1 (.1) Lus10031390
[exp]
14.5 0.9205
AT2G38560 RDO2, TFIIS REDUCED DORMANCY 2, transcript... Lus10025215
[exp]
14.7 0.9007

Lus10029729 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.