Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77260 671 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G39750 639 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 626 / 0 Putative methyltransferase family protein (.1) AT4G14360 372 / 9e-121 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G04430 370 / 7e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G23300 367 / 5e-119 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G14430 354 / 6e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G34300 357 / 3e-113 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G51070 356 / 1e-111 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G29470 350 / 1e-110 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042762 [exp] 1078 / 0 AT1G77260 741 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028656 [exp] 786 / 0 AT1G77260 744 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10000973 [exp] 675 / 0 AT1G77260 652 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10004702 [exp] 641 / 0 AT2G39750 1021 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10030155 [exp] 637 / 0 AT2G39750 1049 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10001013 [exp] 629 / 0 AT2G39750 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10040268 [exp] 604 / 0 AT2G39750 967 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10011815 [exp] 372 / 1e-120 AT1G04430 1045 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10022291 [exp] 356 / 1e-114 AT5G14430 881 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G077100 [exp] 741 / 0 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G059500 [exp] 631 / 0 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G199300 [exp] 599 / 0 AT2G39750 998 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G036800 [exp] 363 / 2e-117 AT1G04430 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G342300 [exp] 361 / 2e-116 AT5G14430 893 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G226000 [exp] 360 / 5e-116 AT1G04430 939 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.010G185000 [exp] 358 / 3e-115 AT2G40280 810 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G184500 [exp] 359 / 2e-113 AT1G29470 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G075800 [exp] 359 / 2e-113 AT1G29470 1048 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G118100 [exp] 356 / 4e-111 AT3G51070 990 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10029731 pacid=23151976 polypeptide=Lus10029731 locus=Lus10029731.g ID=Lus10029731.BGIv1.0 annot-version=v1.0 ATGAAACCCCCCACCTCCGCTGCTGCCGCCGTCGGCACAGCCGTAGACTTCGTCAAAACCCCTAATTTCGTCAAAATTGCCGTCATCTCTCTCCTCTCCC TCTCTATCTTCCTCCTCTTCTACCACCACAACCCTCCCTTCCCCTCCGCTTTCTCCACCTTCTCCTCCTCCTCCTCCCCTTCCACCGCCGCCAATTACAC TTCTGCCGCCGTCAATTCCACCTCAGCTCCCTCCAAATCCTCCTCGATTATAATCAACGCGAAGAAACTGCCTCCTCCTTCTCCTCCTCCCCCTCCTCCG CCACCTCCTCAACCTGTTGCGAAGCGGACGGGGATCGTGGACGAGAACGGCGTTATGACGGAAGATTTCGAAGTCGGAGAGTTTGCTCCGAGCGAGATGG AGGATGCTTATGGTCCCAGGTCAGGAACAGAGGAACCAGAGGAACCGAAACGCAAGTACGCCAAATTCCAAACGTGTGAGGAGAGCAAGATCGATTACAT TCCTTGTTTAGACAAGTCTGAAAGAAAATGCTCTAATTCAAGGCTGGATTGCGTCGTCCCTATGCCTAGCGGCTACCAGAAATCCATCCCTTGGCCCAGG AGCCGCGACGAGGTTTTGCTTCATAACATACCTGATACACGTCTGGTTCAAGATCAAGGTAGCTGGTATTCAATGTATGTTAAAGATGATAAGATAGTTT TCCATGATGGTGGCGCAAATTCAGATTTCGTCAATGGAGTTGATCAATATCTAAACTGGATTTCACAGATGGTTCCTGACATTGATTTTGGTCGTGGAAC ACGCGTTGCCTTAGACTTTGGTTCTGGGATTGGGAGCTTTGCTGCGTCTTTGTTTCGGCGCAATGTTACAACTCTTTCAATTGGACCAAATGATGTTCAT AAGAACCACGTTCAGTTTGTATTAGAGCGAGGCCTTCCTGCTGTGGTAGCGGTATTTGGTACTCGCAGGTTGCCATATTCAAGCCAAGCTTTTGACTTGA TACATTGTTCTGGATCCGGAATCGATTGGACTTTTGATAATCGTGTTTTGCTTCTCGAGGTGAACAGACTGTTGAGAGCAGGGCGATACTTTGTGTTGCG AGCACCAAAAGATGATAACCAATGGAAAGAAATTGAGGATCTTACTAGGCGCATCTGTTGGAAACTTGTCAAGAAGGAAGGTGATGTTGCTATCTGGCGT AAGCCATTGAACAACAGTTGCTATCTTAGTAGGGAGATTGGAGCACAACCACCACTTTGTAGTTCCTACGAGGATCCAGATAATGTTTGGTATTTCAATG TGACCGAATGCATTACTCCTTTACCAGAGGAAGGATACGGCTCAAATGTTACCTTGTGGCCGGCGCGACTTCACTATCCTCCAGACCGACTCCAGAGTAT CAGACTAGAAGCATCTATATCTAGAAAGGAGCTGCTGAGAGCAGAATCAAAATACTGGTATGAAATAATAAGCAGTTATGTTAGAGCTTTCCATTGGAAA GAACAGAACTTCCGGAATGTCATAGATATGAAGGCTGGATTTGGAGGGTTTGCAGCCGCATTGCATGACTTAGAACTTGCTTCTTGGGTCATGAATGTTG TTCCAGTCAACGGCTTCAACACCTTACCTGTTATTTATGACCGCGGACTGATCGGAGTTATGCATGACTGGTGCGAGCCATTTGATACTTACCCCAGATC GTATGACCTCGTTCATGCAGCAGGCTTATTCACCGATGAGAAGAGAAGGAAAAAATGTGAGCTGTCAACAATCTTGTTGGAGATGGACAGGATGCTAAGA CCCGGTGGAACGGCTTACATTCGAGACAGCTTAGCAGTTATCGACGAAATCCATGAGATAGCTGATGCATTGGGATGGGTGGTCAGGGTTCACGACACTG GTGAAGGACCTCATTCGAGCTGGAGATTTCTAGTGTGCGAGAAACGTATGCCCTGA
AA sequence Show only first row Show all	>Lus10029731 pacid=23151976 polypeptide=Lus10029731 locus=Lus10029731.g ID=Lus10029731.BGIv1.0 annot-version=v1.0 MKPPTSAAAAVGTAVDFVKTPNFVKIAVISLLSLSIFLLFYHHNPPFPSAFSTFSSSSSPSTAANYTSAAVNSTSAPSKSSSIIINAKKLPPPSPPPPPP PPPQPVAKRTGIVDENGVMTEDFEVGEFAPSEMEDAYGPRSGTEEPEEPKRKYAKFQTCEESKIDYIPCLDKSERKCSNSRLDCVVPMPSGYQKSIPWPR SRDEVLLHNIPDTRLVQDQGSWYSMYVKDDKIVFHDGGANSDFVNGVDQYLNWISQMVPDIDFGRGTRVALDFGSGIGSFAASLFRRNVTTLSIGPNDVH KNHVQFVLERGLPAVVAVFGTRRLPYSSQAFDLIHCSGSGIDWTFDNRVLLLEVNRLLRAGRYFVLRAPKDDNQWKEIEDLTRRICWKLVKKEGDVAIWR KPLNNSCYLSREIGAQPPLCSSYEDPDNVWYFNVTECITPLPEEGYGSNVTLWPARLHYPPDRLQSIRLEASISRKELLRAESKYWYEIISSYVRAFHWK EQNFRNVIDMKAGFGGFAAALHDLELASWVMNVVPVNGFNTLPVIYDRGLIGVMHDWCEPFDTYPRSYDLVHAAGLFTDEKRRKKCELSTILLEMDRMLR PGGTAYIRDSLAVIDEIHEIADALGWVVRVHDTGEGPHSSWRFLVCEKRMP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77260			S-adenosyl-L-methionine-depend...		Lus10029731 [exp]	0	1
AT2G01080			Late embryogenesis abundant (L...		Lus10005728 [exp]	9.5	0.8729
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013332 [exp]	38.2	0.8749
AT1G10140			Uncharacterised conserved prot...		Lus10007729 [exp]	41.9	0.8676
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10041646 [exp]	45.9	0.8411
AT2G36070		ATTIM44-2	translocase inner membrane sub...		Lus10003553 [exp]	110.5	0.8415
AT4G38260			Protein of unknown function (D...		Lus10016024 [exp]	111.0	0.8560
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10001304 [exp]	112.4	0.8186
AT5G20350		TIP1	TIP GROWTH DEFECTIVE 1, Ankyri...		Lus10008037 [exp]	112.4	0.8367
AT1G17860			Kunitz family trypsin and prot...		Lus10039208 [exp]	112.4	0.8563
AT5G56580		ANQ1, ATMKK6	ARABIDOPSIS THALIANA MAP KINAS...		Lus10012938 [exp]	117.1	0.8496

Compare expression of checked genes

Lus10029731 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.