Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08455 341 / 2e-119 BTB/POZ domain-containing protein (.1) AT1G01640 77 / 6e-17 BTB/POZ domain-containing protein (.1.2) AT3G56230 76 / 4e-16 BTB/POZ domain-containing protein (.1) AT5G13060 65 / 8e-12 ABAP1 ARMADILLO BTB protein 1 (.1) AT3G48360 65 / 8e-12 ATBT2, BT2 BTB and TAZ domain protein 2 (.1) AT2G39760 64 / 1e-11 ATBPM3 BTB/POZ/MATH-domains containing protein (.1.2) AT3G43700 63 / 3e-11 ATBPM6 BTB-POZ and MATH domain 6 (.1) AT4G37610 63 / 3e-11 BT5 BTB and TAZ domain protein 5 (.1) AT1G55760 62 / 5e-11 BTB/POZ domain-containing protein (.1) AT3G06190 61 / 2e-10 ATBPM2 BTB-POZ and MATH domain 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042763 [exp] 477 / 7e-173 AT4G08455 354 / 1e-124 BTB/POZ domain-containing protein (.1) Lus10013670 [exp] 69 / 2e-13 AT3G48360 371 / 6e-128 BTB and TAZ domain protein 2 (.1) Lus10041235 [exp] 67 / 5e-13 AT3G06190 339 / 8e-117 BTB-POZ and MATH domain 2 (.1.2) Lus10021946 [exp] 68 / 1e-12 AT3G06190 620 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Lus10029677 [exp] 64 / 3e-11 AT1G21780 538 / 0.0 BTB/POZ domain-containing protein (.1.2) Lus10042717 [exp] 63 / 3e-11 AT1G21780 557 / 0.0 BTB/POZ domain-containing protein (.1.2) Lus10027101 [exp] 62 / 9e-11 AT1G55760 389 / 3e-136 BTB/POZ domain-containing protein (.1) Lus10008348 [exp] 61 / 2e-10 AT1G55760 516 / 0.0 BTB/POZ domain-containing protein (.1) Lus10034070 [exp] 60 / 8e-10 AT5G19330 1092 / 0.0 ARM repeat protein interacting with ABF2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G077000 [exp] 377 / 3e-133 AT4G08455 369 / 2e-130 BTB/POZ domain-containing protein (.1) Potri.005G183600 [exp] 356 / 7e-125 AT4G08455 342 / 2e-119 BTB/POZ domain-containing protein (.1) Potri.013G083800 [exp] 72 / 1e-14 AT3G56230 305 / 2e-104 BTB/POZ domain-containing protein (.1) Potri.005G210000 [exp] 67 / 3e-12 AT5G19330 977 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.001G468700 [exp] 65 / 5e-12 AT1G55760 522 / 0.0 BTB/POZ domain-containing protein (.1) Potri.010G029500 [exp] 65 / 8e-12 AT3G06190 580 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.008G200700 [exp] 63 / 3e-11 AT3G06190 582 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.002G052700 [exp] 63 / 4e-11 AT5G19330 994 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.005G178400 [exp] 59 / 7e-10 AT1G21780 543 / 0.0 BTB/POZ domain-containing protein (.1.2) Potri.002G082800 [exp] 59 / 8e-10 AT1G21780 535 / 0.0 BTB/POZ domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10029732 pacid=23152033 polypeptide=Lus10029732 locus=Lus10029732.g ID=Lus10029732.BGIv1.0 annot-version=v1.0 ATGAACTCCCGGCGCGTTGACGAGACGGACACCGATTCCGACTCCGACACTATGCGATGCCTCTCTTGCAAAGACGACTATGACTCGGTTGACGCCGGAA CCTGCAAGGTGTGCTACGAGGAGGCAACCGAGACCGAGCAAGAGCTCAACAAGGAAATCGAAGATCTCAAGGCTAAGATCGCCTTCCTGAAATTCTCCTC CCCCGTCGCTCACGGCGGAAAATTCTCCGACGTCGTATTGGTCGCCTCCTCCGACGAAGGCGATGATGGCTTCCCTTCTTTGCCCGTGCCTGCTCACAAG GCTGTTCTGGCGGCTCGCTCCCCGGTGTTCAGAGCAATGCTTGAGAATGAGATGGAGGAAAGTAGAAGCGGCACCATAAAGATCTCCGACGTGTCGTACG ATGCCCTGCGAGCCTTCGTAAGCTACATGTACACTGCCGAAGCACGTCTCGACGAACAGATGGCTTGCGACCTTTTGGTGTTGGCTGAGAAGTATCAGAT TAAGCATCTCAAAGGCTACTGCGAGAAGTTCCTCGTTTCGAAATTGAACTGGGACAGCTCGTTGATGAGCTACGCCTTTGCTCACCAGCACAATGCAAGC CACATGCTCAAAGCTTCGTTATCGTTAATCACGGAGAACATGGACAAACTTACGAAACGGGAGGAGTACCTGGAGCTGGTGGAGAAAGATCCGAGGCTGG TGGTTGATATCTACGAAGCGTATCTATCCAAGCAGGTGAATACTGCAGCAGCAGCAGCAGCATCATCATATAGGGATTGCTCCAAGAGCAAGAAGTTGTA G
AA sequence Show only first row Show all	>Lus10029732 pacid=23152033 polypeptide=Lus10029732 locus=Lus10029732.g ID=Lus10029732.BGIv1.0 annot-version=v1.0 MNSRRVDETDTDSDSDTMRCLSCKDDYDSVDAGTCKVCYEEATETEQELNKEIEDLKAKIAFLKFSSPVAHGGKFSDVVLVASSDEGDDGFPSLPVPAHK AVLAARSPVFRAMLENEMEESRSGTIKISDVSYDALRAFVSYMYTAEARLDEQMACDLLVLAEKYQIKHLKGYCEKFLVSKLNWDSSLMSYAFAHQHNAS HMLKASLSLITENMDKLTKREEYLELVEKDPRLVVDIYEAYLSKQVNTAAAAAASSYRDCSKSKKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08455			BTB/POZ domain-containing prot...		Lus10029732 [exp]	0	1
AT5G02290		NAK	Protein kinase superfamily pro...		Lus10010835 [exp]	15.9	0.9108
AT5G08560			transducin family protein / WD...		Lus10001045 [exp]	20.9	0.9079
AT3G04660			F-box and associated interacti...		Lus10007277 [exp]	24.8	0.8943
AT5G56520			unknown protein		Lus10020285 [exp]	27.1	0.8620
AT3G51100			unknown protein		Lus10041813 [exp]	28.6	0.8785
AT5G11680			unknown protein		Lus10020200 [exp]	29.8	0.9028
AT2G29410		ATMTPB1, MTPB1	metal tolerance protein B1 (.1...		Lus10016487 [exp]	31.0	0.8990
AT1G51550			Kelch repeat-containing F-box ...		Lus10033377 [exp]	31.3	0.8917
AT5G52210		ATGB1, ATARLB1	GTP-binding protein 1 (.1.2)		Lus10014991 [exp]	33.3	0.8740
AT4G10330			glycine-rich protein (.1)		Lus10001606 [exp]	33.9	0.9047

Compare expression of checked genes

Lus10029732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.