Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77250 313 / 6e-100 RING/FYVE/PHD-type zinc finger family protein (.1) AT3G01460 72 / 8e-13 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1) AT3G08020 61 / 2e-09 PHD finger family protein (.1) AT5G24330 54 / 1e-07 SDG34, ATXR6 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) AT5G09790 49 / 4e-06 PDE336, SDG15, ATXR5 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) AT5G44800 50 / 6e-06 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT4G29940 49 / 8e-06 HD PRHA pathogenesis related homeodomain protein A (.1.2) AT1G79350 46 / 8e-05 EMB1135 embryo defective 1135, RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G36720 46 / 8e-05 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) AT3G52100 45 / 0.0001 RING/FYVE/PHD-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042764 [exp] 1103 / 0 AT1G77250 301 / 1e-95 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10028655 [exp] 536 / 0 AT1G77250 259 / 1e-79 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10000973 [exp] 516 / 5e-172 AT1G77260 652 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10008796 [exp] 71 / 2e-12 AT3G01460 1574 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10030625 [exp] 67 / 4e-11 AT3G01460 706 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10030864 [exp] 65 / 2e-10 AT3G01460 511 / 2e-152 methyl-CPG-binding domain 9 (.1) Lus10016404 [exp] 59 / 1e-08 AT3G08020 569 / 0.0 PHD finger family protein (.1) Lus10019715 [exp] 57 / 3e-08 AT3G08020 726 / 0.0 PHD finger family protein (.1) Lus10008495 [exp] 56 / 7e-08 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G183700 [exp] 478 / 3e-163 AT1G77250 315 / 2e-100 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.002G076900 [exp] 468 / 2e-159 AT1G77250 332 / 3e-107 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.017G072460 [exp] 69 / 7e-12 AT3G01460 929 / 0.0 methyl-CPG-binding domain 9 (.1) Potri.009G059500 [exp] 63 / 3e-10 AT3G08020 763 / 0.0 PHD finger family protein (.1) Potri.009G059700 [exp] 60 / 4e-09 AT3G08020 748 / 0.0 PHD finger family protein (.1) Potri.001G264800 [exp] 56 / 5e-08 AT3G08020 701 / 0.0 PHD finger family protein (.1) Potri.001G358900 [exp] 56 / 8e-08 AT1G50620 314 / 8e-97 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.003G126600 [exp] 55 / 2e-07 AT1G63490 1013 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.007G109900 [exp] 53 / 3e-07 AT5G09790 473 / 1e-167 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) Potri.006G075400 [exp] 53 / 4e-07 AT2G19260 202 / 3e-55 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Lus10029733 pacid=23151997 polypeptide=Lus10029733 locus=Lus10029733.g ID=Lus10029733.BGIv1.0 annot-version=v1.0 ATGCTAAAAGGGATAGGCGGCGAAGAGGGAACGAGCTCTGGGCCAGGCATGGATGGTAGAGGGAAATGCTTGAAGGGTGAAGTGATTAATGGGTTTGGGA ATAACTTTCGTGATGGGATTTTGGTGTCTGGTGATGGACTTCGTACTTACAGGAGGAGGAAGCAGACAACATCTAGTTCTGAGAGCAAAGATGTAGGGAA TGGTAGTGTTTCAGGAGAACCTGCTGGCAAATTAGCAGACCAGGAAGAGATTATGCGTAGACCCCAGGACTATCCTACTAGTGGTGAAGCTGGTTTAACT GATTCCAATGATGTTTCACAAGGCCATTGGAGAAATTATATCCTTGAGCAAATGCATCGCTCTTTGAGCGATGATGAAGGTGGTATACAGCGGTGCATCC AGGATGTGCTTAGAATGCCCCTGAAGGTGTCTGATGCTTGTGACAAAGATATGTGTAAACCCTCAAAGAAACTGTGGTTGTCTAATGGAACTCCTCATTT GGCTAAACAGAATGATGTTAGATCCAAAGGGGCATCTGGTGAACCAAATCACGATACCATGACTGATGCGTGTCGGCTTGCATTCCATGGCATCATATCA TCTGAGAAGTTCACCTCGCTATGCAAACTACTATTTGAAAATTTCCATGAAAGTAGGGCTGATAACCTTTTCAGCCTAAGTCTTATCAATCAAAGGATGA AAGATGGAGATTATGAGCAATCACCCGGGCTTTTCTTTCAGGATATTCAAAAGTTTTGGGAAAAACTTGAAGGCATTGGAAGTGAACTGATTTTCCTTGC TAAGAGCCTCGCTGATGTATCAAAGAGCTATAAGAAGCTAGCCAAACAGGAATCTGATTCCTCTGGCAAAGCTGATCAAGCAGCAGCAGCATCGGTATGC ACGTGCAAGCACTGCAGGAGGGAAGCAGATGGGAGGAATTGCTTAGTCTGTGATTCGTGTGAAGATATGTACCATGTTTCTTGTATAGAACCTGCCGTCG AAGAAATTCCTCCCAAAAGTTGGTATTGTTCCAGTTGCTCGGCTAATGGAATGGGCTCTCATGAGAACTGTGTTGTATGTGAGAGGCTAAGTGCTCCCAG TACCCTAGAAGATAATGGAGCTGATACTGATACTGCTGTCTGTCAGATGAACGAGGAAGCATTCTTCTCCAGCTCCGAGGGGCCATCAAAAGAGAGCAAT AAAGATCCACAACAGCTGTTAGAAGAAGAAATGGGCACCGAAACTTCAAATGATTGTAAAATTTGTGGAAGTGACAGTGGTGGAAAGATGAAGATTTGTG AACACACTTTCTGCCATAATAAGTACCACGTGAGGTGTTTGACTACAAAGCAGCTGAGCTCACACGGTCCCCGTTGGTACTGCCCTTCGTGCCTTTGCCG GCATTGCCTAACTGACCAAGACGATGAGAAGATTGTTCTTTGCGACTCCTGTGACTGTGCATACCACATATACTGCATGGACCCGCCGCGTACCTCTATA CCTAGAGGGAAATGGTTTTGCAGGCAATGCATGGCCAAACTTCAGAAAGTGCGCAGGGCAAGGAAGGCATATGAGAATCATACTAATAATGCCGGCAAGA GAGCATTTGAAGAAATGAACAAGAGGTCGAAAAGGAAGATTGAAGATGTGTTTGATGGTAAGGAAGGGATGGAATTGCTGGTAAATGCTCTTTTCATAGA AGACAATTTGGCAGGCAAGCAGAGTCAGAGTTGA
AA sequence Show only first row Show all	>Lus10029733 pacid=23151997 polypeptide=Lus10029733 locus=Lus10029733.g ID=Lus10029733.BGIv1.0 annot-version=v1.0 MLKGIGGEEGTSSGPGMDGRGKCLKGEVINGFGNNFRDGILVSGDGLRTYRRRKQTTSSSESKDVGNGSVSGEPAGKLADQEEIMRRPQDYPTSGEAGLT DSNDVSQGHWRNYILEQMHRSLSDDEGGIQRCIQDVLRMPLKVSDACDKDMCKPSKKLWLSNGTPHLAKQNDVRSKGASGEPNHDTMTDACRLAFHGIIS SEKFTSLCKLLFENFHESRADNLFSLSLINQRMKDGDYEQSPGLFFQDIQKFWEKLEGIGSELIFLAKSLADVSKSYKKLAKQESDSSGKADQAAAASVC TCKHCRREADGRNCLVCDSCEDMYHVSCIEPAVEEIPPKSWYCSSCSANGMGSHENCVVCERLSAPSTLEDNGADTDTAVCQMNEEAFFSSSEGPSKESN KDPQQLLEEEMGTETSNDCKICGSDSGGKMKICEHTFCHNKYHVRCLTTKQLSSHGPRWYCPSCLCRHCLTDQDDEKIVLCDSCDCAYHIYCMDPPRTSI PRGKWFCRQCMAKLQKVRRARKAYENHTNNAGKRAFEEMNKRSKRKIEDVFDGKEGMELLVNALFIEDNLAGKQSQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10029733 [exp]	0	1
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10042764 [exp]	1.4	0.9164
AT5G21170		AKINBETA1	5'-AMP-activated protein kinas...		Lus10037424 [exp]	2.0	0.8228
AT2G17020			F-box/RNI-like superfamily pro...		Lus10023988 [exp]	3.7	0.8622
AT2G45620			Nucleotidyltransferase family ...		Lus10015854 [exp]	6.0	0.8459
AT1G32090			early-responsive to dehydratio...		Lus10002133 [exp]	6.0	0.7864
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10033487 [exp]	7.1	0.8156
AT4G00525			unknown protein		Lus10037852 [exp]	7.2	0.7513
AT5G46190			RNA-binding KH domain-containi...		Lus10038509 [exp]	7.9	0.7890
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Lus10012188 [exp]	8.4	0.7718
AT2G02148			unknown protein		Lus10035090 [exp]	8.9	0.7821

Compare expression of checked genes

Lus10029733 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.