Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25140 212 / 2e-62 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G02350 177 / 2e-49 GAUT9 galacturonosyltransferase 9 (.1) AT3G61130 161 / 5e-43 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT5G47780 155 / 2e-41 GAUT4 galacturonosyltransferase 4 (.1) AT1G18580 151 / 3e-40 GAUT11 galacturonosyltransferase 11 (.1) AT4G38270 151 / 1e-39 GAUT3 galacturonosyltransferase 3 (.1.2) AT2G20810 140 / 5e-36 GAUT10, LGT4 galacturonosyltransferase 10 (.1) AT3G01040 120 / 3e-29 GAUT13 galacturonosyltransferase 13 (.1.2) AT5G54690 118 / 2e-28 IRX8, GAUT12, LGT6 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) AT5G15470 117 / 4e-28 GAUT14 galacturonosyltransferase 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003045 [exp] 176 / 4e-49 AT3G02350 827 / 0.0 galacturonosyltransferase 9 (.1) Lus10041389 [exp] 166 / 6e-45 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10036540 [exp] 166 / 2e-44 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1) Lus10038739 [exp] 155 / 7e-41 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10018554 [exp] 151 / 6e-40 AT2G20810 872 / 0.0 galacturonosyltransferase 10 (.1) Lus10013506 [exp] 150 / 6e-40 AT1G18580 843 / 0.0 galacturonosyltransferase 11 (.1) Lus10026546 [exp] 149 / 2e-38 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10013832 [exp] 149 / 2e-38 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007979 [exp] 146 / 3e-38 AT1G18580 845 / 0.0 galacturonosyltransferase 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G246500 [exp] 216 / 5e-64 AT3G25140 912 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.004G111000 [exp] 203 / 6e-59 AT3G02350 860 / 0.0 galacturonosyltransferase 9 (.1) Potri.017G106800 [exp] 202 / 6e-59 AT3G02350 812 / 0.0 galacturonosyltransferase 9 (.1) Potri.008G010000 [exp] 189 / 3e-53 AT3G25140 671 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.002G151400 [exp] 161 / 5e-43 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.014G073800 [exp] 159 / 2e-42 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.006G001100 [exp] 157 / 7e-42 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.004G206000 [exp] 155 / 7e-41 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2) Potri.016G001700 [exp] 152 / 9e-40 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.015G060800 [exp] 148 / 6e-39 AT1G18580 850 / 0.0 galacturonosyltransferase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8 CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10029734 pacid=23152017 polypeptide=Lus10029734 locus=Lus10029734.g ID=Lus10029734.BGIv1.0 annot-version=v1.0 ATGATTCAGATCTCAGACTATGACAATTTGCATGTCATGATTAATGAGGAGGTCCACTCATGGCGTCAGGAAGGGATCAATATCATCTACAAACATAGGT TGATTAATGAGAACTTGCGGACTAGACAGGAGAATGTGAATCTATACTTCCATTCTGAGATGGAACAAAAAGTGAATCCATATGTTTCATATCGCAAAGT TCTGGATTTCTTTTGTTTGACATATTTGAGACAGTCTCTCTCACTTTGTTACTACTACCTGCTTAGTTACTTTGTATTATTCTCACCTAGACCTTATTCC GGCGGACGGAAAGCGGTGGAGAAACAGAGACTCAGAGAGACAGTGGAAGCGAAGATGAAGGTTACATGGAACAAGGACAAGGTCAACAAGAAACGCCCTT TGGCCGCCATTTCCAACCACCGTAATCTACCCTTTGACCGAGATGAAGACGTAGACCCCAATCACACCAGCAGTAACAGCAAGGACTGCCACGATGATGA TTCTGCAAACGGCAACGGTGAAAAGAAAACTGATGCAATAGGAAGCTCAGTCAGTCGTTTCAAGCTCAGGGAGACAATAGCCAAGGCATGGGTGACCCTT GGCAGAGCACAGTTGAACTTTGGGGAACCTGACGATGCAATTGAGAGCTTCGACAGGGCTTTAGCTATCCAAGATGATGATATAATCGAGCAGAAGGATT TGACAGGGTTGTGGAAGATCGATATGGATGGGAAGGTCAACGGTGCTGTGGAGACTTGTTTCAGTTCGTTCCATCCTTATGCTCAGTACATGAACTTCTC ACACCCTTTGATCAAAGCAAAGTTCAACCCTAGAGCCTGCGCCTGTGCTTACGGGGTGAACTTCTTCTATCTCGATGCTTGGAGGGAGAAGTGCCCGGGG AAGTACCATTGCCGGCAGACTCTCAACGAGAACCGGACGTTGTGGAAGCTAGGAACTTCACCTCCAGGGTTGATCACGTACTACTCAACAACGAAGCCAC TCGAGAAGTCATGGCACGTGCCGGGAGCCCGGGTAGAACCCGAGCATCAGCATGGGCAAGATCAGGAAAGCTGCGGCGGTCCACTTCAACGGGAACATGA AGCCGTGGATCGATATAGCCATGACCAAGTTCAGACCACTGTGGACCAAGCATGGGTAACCCTTGGTAGAGCACAGTTGAACTTTGGGGAACCTGACGAT GCAATTGAGAGCTTCGACAGGGCTTTAGCTATCCAGCCTGATTTGAAGGAGGCTGAAGTTGACAGACGAACTGCATCACAGCTAGTAAGGAAACGAAAGC AACTTCACTCCACTGGGTTGAGTGTTGACACCAACCGCTACGTAGTCAAGGACAAGACAAGCAGCTCTGCAGCCGGAGAAAGCAATTGTTGA
AA sequence Show only first row Show all	>Lus10029734 pacid=23152017 polypeptide=Lus10029734 locus=Lus10029734.g ID=Lus10029734.BGIv1.0 annot-version=v1.0 MIQISDYDNLHVMINEEVHSWRQEGINIIYKHRLINENLRTRQENVNLYFHSEMEQKVNPYVSYRKVLDFFCLTYLRQSLSLCYYYLLSYFVLFSPRPYS GGRKAVEKQRLRETVEAKMKVTWNKDKVNKKRPLAAISNHRNLPFDRDEDVDPNHTSSNSKDCHDDDSANGNGEKKTDAIGSSVSRFKLRETIAKAWVTL GRAQLNFGEPDDAIESFDRALAIQDDDIIEQKDLTGLWKIDMDGKVNGAVETCFSSFHPYAQYMNFSHPLIKAKFNPRACACAYGVNFFYLDAWREKCPG KYHCRQTLNENRTLWKLGTSPPGLITYYSTTKPLEKSWHVPGARVEPEHQHGQDQESCGGPLQREHEAVDRYSHDQVQTTVDQAWVTLGRAQLNFGEPDD AIESFDRALAIQPDLKEAEVDRRTASQLVRKRKQLHSTGLSVDTNRYVVKDKTSSSAAGESNC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Lus10029734 [exp]	0	1
AT1G30890			Integral membrane HRF1 family ...		Lus10007418 [exp]	1.4	0.8050
AT5G40770		ATPHB3	prohibitin 3 (.1)		Lus10035521 [exp]	1.7	0.8021
AT2G22260			oxidoreductase, 2OG-Fe(II) oxy...		Lus10039112 [exp]	3.3	0.7852
AT3G52640			Zn-dependent exopeptidases sup...		Lus10020806 [exp]	11.6	0.7971
AT5G57280		RID2	root initiation defective 2, S...		Lus10015533 [exp]	26.5	0.7824
AT4G04750			Major facilitator superfamily ...		Lus10018957 [exp]	57.7	0.7355
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10034528 [exp]	82.2	0.7568
AT5G03455		ACR2, ARATH;CDC...	ARSENATE REDUCTASE 2, Rhodanes...		Lus10014420 [exp]	88.6	0.7645
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10026617 [exp]	97.7	0.7256
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10013322 [exp]	118.5	0.7337

Compare expression of checked genes

Lus10029734 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.