Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29470 1031 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G34300 1018 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G64030 1002 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G51070 897 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G40280 637 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G56080 599 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G19430 562 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 519 / 4e-175 Putative methyltransferase family protein (.1) AT1G77260 498 / 5e-167 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G39750 498 / 2e-166 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042767 [exp] 1476 / 0 AT1G29470 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10018954 [exp] 1197 / 0 AT1G29470 1047 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10028650 [exp] 1186 / 0 AT1G29470 1036 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10020894 [exp] 955 / 0 AT5G64030 1019 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10019644 [exp] 887 / 0 AT5G64030 922 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028354 [exp] 854 / 0 AT3G51070 1051 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10033481 [exp] 852 / 0 AT5G64030 924 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041804 [exp] 840 / 0 AT3G51070 1034 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10014274 [exp] 838 / 0 AT3G51070 1041 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G184500 [exp] 1140 / 0 AT1G29470 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G075800 [exp] 1120 / 0 AT1G29470 1048 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.007G104000 [exp] 990 / 0 AT5G64030 1022 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G065200 [exp] 979 / 0 AT5G64030 1078 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G118100 [exp] 898 / 0 AT3G51070 990 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G017400 [exp] 876 / 0 AT3G51070 960 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G185000 [exp] 636 / 0 AT2G40280 810 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G260600 [exp] 570 / 0 AT1G19430 953 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G059500 [exp] 501 / 4e-168 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 495 / 3e-166 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10029736 pacid=23152011 polypeptide=Lus10029736 locus=Lus10029736.g ID=Lus10029736.BGIv1.0 annot-version=v1.0 ATGGCAATGGGGAAGTACTCACGGGTGGATGGAAGGAAGACCTCGAACTATTGTTCGACAATCAGTGTGGCTGCATTTGTTGCTTTGTGTTTGATCGGTG TTTGGATGTTCATGTCATCATCCGTCGTCCCTGGTGGTCATGATACGAATGTTGCAACGAGTCAAGGTAAACAAAGCATCGTTGAGTCAGCTGGTTCCAA GGGGTTTGAAGATAGTTCTGGTGATTCTTTAACAGATAAAGACGATGGAAACACTGACAATACTATCAGTGATAGCCAGTCAGACGTCCAGGAAGAAACC AAGGTGACCGAAACTGAGACGGAGTCGACTCAGGAGGAACCGACCACATCTTCAAAGCAAAGTTTCGAGGATGGTGATGGGAAGGAGGATGAGAGTTCAG GAGAGACAGCTTCGAATTCAGTTCCCGGGGAGAAGGAAACTGGCAACGCCGAGAAAAGTGAGGAGACTGGATCAGAGGATGGTTCAGGTGAGAAGTCCGA GTCAAATGAGGTGGAGAAGACGACCACCGATGAAGTTTCGAATGAGAATAAGAATGATAGTGAGACAGAGGATGCTTCAGGTGAGAAATCTAAGTCAGAT GAAGTGGAGACGCCCACAGAGGATGTTTTCCCAGCTGGTGCGCAGTCTGAACTTCTGAATGAGACTAATACACAGAACGGGGCTTGGGCGACTCAAGCTG CAGAGTCGCAGAAGGAGAAGAACTCTCTAGAATCTTCAGATGCTAAACAGGATGCTCAAGCATGGAAAGTATGCAATACCACTGCTGGGGCTGACTACAT TCCTTGTCTTGATAACTGGAAAGCTATCCGAAAGCTGCATAGCACAAAGCATTACGAACATCGCGAGAGGCATTGCCCTGATGAAGCACCTACCTGTGTT GTTCCTGTGCCTGAAGGATATAAGAAGTCTATTAAGTGGCCTAAAAGCAGGGACAAGATCTGGTATTACAATGTTCCCCATACCAAGCTCGCTGAGGTGA AAGGACATCAGAACTGGGTCAAAGTTACTGGTGAATATCTTACGTTTCCGGGTGGTGGAACCCAGTTTAAGCATGGTGCTCTTCATTACATTGATTTCAT TCAAGAATCACTTGCAGACATTGCTTGGGGCAAAAGGAGTCGTGTGATATTGGATGTTGGGTGCGGGGTTGCCAGCTTTGGTGGTTATCTTTTTGAGCGT GATGTCCTTGCAATGTCATTTGCTCCAAAAGATGAGCATGAAGCTCAGGTTCAGTTTGCCTTAGAGCGGGGAATTCCTGCCACATTGGCTGTTATGGGTA CCACTAGGCTGCCGTTCCCCGGTTACGTGTTTGATCTGGTTCACTGCGCACGTTGCAGGGTTCCCTGGCATATTGAAGGTGGTAAACTTCTCTTGGAGCT CAATCGTGTATTGCGACCTGGTGGCTACTTTGTTTGGTCTGCCACTCCAGTTTATCAGAAACTGGAAGAGGATGTCGGAATTTGGCAAGAAATGTCAAAG TTGACAAAGGCTATGTGCTGGGATCTAGTGGCGATAAAAAAGGACAGGCTGAATGGTGTCGGTGCTGCAATATACAAGAAGCCTACTTCCAATGAGTGCT ATAATCAGAGATCCAAGAATGAGCCCCCGTTGTGCAAGGAATCCGATGATCCTAATGCAGCTTGGAATGTGCCTCTCGAAGCATGCATGCATAAGGTGCC TGAAGACGAATCTGTACGTGGATCCAAGTGGCCGGAGCAATGGCCAAAGAGGTTGGAGAAGGCACCATACTGGTTGAAATCCCAGGTTGGAGTTTATGGT AAAGCTGGCCAGGAAGACTTTGTTGCTGACTTGAAGCACTGGAAGAACGTTGTCTCACAATCATATCTCTCTGGAATGGGCATCAACTGGGCTTCTGTAA GGAATGTCATGGACATGAGAGCCGTGTATGGAGGGTTTGCTGCTGCACTGAAGGATTTGCCGGTGTGGGTTATGAACGTTGTGCCGATCGATTCTCCAGA CACACTTCCGATTATATACGAGCGTGGTCTTTTCGGAATGTACCATGACTGGTGCCAATCATTCAACACCTACCCCAGGACGTTTGATCTTCTGCACGCA GACCATCTTCTCTCCATTGTCAAAAAGAGGTGTAATCTAGTGGGAGTGTTTGCGGAAATCGACAGGATCTTGAGGCCAGAAGGGAAGCTGATAGTACGTG ACAATGTCGAAACCATAACCGAGGTTGAGAACATGGCAAGATCTCTGCACTGGGACGTACGGATGATCTACTCCAAAGAAGGGGAGGGGTTGCTGTGTGT CCAGAAGACAATGTGGCGTCCATCTGAGGCCCAGTTGATATCATCGGCCATCATATAA
AA sequence Show only first row Show all	>Lus10029736 pacid=23152011 polypeptide=Lus10029736 locus=Lus10029736.g ID=Lus10029736.BGIv1.0 annot-version=v1.0 MAMGKYSRVDGRKTSNYCSTISVAAFVALCLIGVWMFMSSSVVPGGHDTNVATSQGKQSIVESAGSKGFEDSSGDSLTDKDDGNTDNTISDSQSDVQEET KVTETETESTQEEPTTSSKQSFEDGDGKEDESSGETASNSVPGEKETGNAEKSEETGSEDGSGEKSESNEVEKTTTDEVSNENKNDSETEDASGEKSKSD EVETPTEDVFPAGAQSELLNETNTQNGAWATQAAESQKEKNSLESSDAKQDAQAWKVCNTTAGADYIPCLDNWKAIRKLHSTKHYEHRERHCPDEAPTCV VPVPEGYKKSIKWPKSRDKIWYYNVPHTKLAEVKGHQNWVKVTGEYLTFPGGGTQFKHGALHYIDFIQESLADIAWGKRSRVILDVGCGVASFGGYLFER DVLAMSFAPKDEHEAQVQFALERGIPATLAVMGTTRLPFPGYVFDLVHCARCRVPWHIEGGKLLLELNRVLRPGGYFVWSATPVYQKLEEDVGIWQEMSK LTKAMCWDLVAIKKDRLNGVGAAIYKKPTSNECYNQRSKNEPPLCKESDDPNAAWNVPLEACMHKVPEDESVRGSKWPEQWPKRLEKAPYWLKSQVGVYG KAGQEDFVADLKHWKNVVSQSYLSGMGINWASVRNVMDMRAVYGGFAAALKDLPVWVMNVVPIDSPDTLPIIYERGLFGMYHDWCQSFNTYPRTFDLLHA DHLLSIVKKRCNLVGVFAEIDRILRPEGKLIVRDNVETITEVENMARSLHWDVRMIYSKEGEGLLCVQKTMWRPSEAQLISSAII

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10029736 [exp]	0	1
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10042767 [exp]	1.0	0.9793
AT4G36660			Protein of unknown function (D...		Lus10026030 [exp]	1.4	0.9312
AT1G64650			Major facilitator superfamily ...		Lus10003219 [exp]	2.0	0.9191
AT4G18030			S-adenosyl-L-methionine-depend...		Lus10003014 [exp]	2.4	0.9235
AT1G64650			Major facilitator superfamily ...		Lus10017322 [exp]	3.2	0.9158
AT4G18030			S-adenosyl-L-methionine-depend...		Lus10011045 [exp]	3.7	0.9082
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10034560 [exp]	5.1	0.8615
AT1G04430			S-adenosyl-L-methionine-depend...		Lus10011815 [exp]	7.3	0.9116
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10041363 [exp]	7.7	0.8763
AT3G02350		GAUT9	galacturonosyltransferase 9 (....		Lus10003045 [exp]	7.7	0.8742

Compare expression of checked genes

Lus10029736 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.