Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63130 415 / 1e-136 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 412 / 2e-135 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12700 412 / 5e-134 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT1G62930 409 / 5e-134 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 405 / 1e-132 RPF2 rna processing factor 2 (.1) AT1G63150 399 / 3e-130 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 395 / 5e-129 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 392 / 1e-127 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 392 / 2e-127 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G12300 385 / 5e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042768 [exp] 1295 / 0 AT1G12700 418 / 8e-138 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014245 [exp] 578 / 0 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10008593 [exp] 556 / 0 AT1G12700 400 / 7e-131 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014244 [exp] 546 / 0 AT1G12700 397 / 7e-130 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10003433 [exp] 540 / 0 AT1G12700 396 / 2e-129 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10022861 [exp] 473 / 1e-159 AT1G12700 370 / 7e-121 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014247 [exp] 436 / 4e-145 AT1G62930 340 / 3e-109 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024962 [exp] 414 / 1e-137 AT1G62680 346 / 3e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003427 [exp] 382 / 6e-127 AT1G12700 291 / 8e-92 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G021200 [exp] 520 / 7e-178 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G271400 [exp] 518 / 5e-177 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G074500 [exp] 517 / 8e-177 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G149800 [exp] 515 / 2e-175 AT1G12700 482 / 6e-162 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G271200 [exp] 514 / 2e-175 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242500 [exp] 513 / 3e-175 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G257300 [exp] 512 / 1e-174 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242200 [exp] 506 / 1e-172 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G038400 [exp] 502 / 1e-170 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G074700 [exp] 494 / 1e-168 AT1G62930 481 / 1e-164 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10029737 pacid=23151946 polypeptide=Lus10029737 locus=Lus10029737.g ID=Lus10029737.BGIv1.0 annot-version=v1.0 ATGTCTCTCATCGGCATCCGGCTGCCCATTAGAGCTCCTCCGCCGCCGCCGCAGCCGCCGCAGCCGCCGCAGCCATTAAGCAACTGGAATAACCTACTCC CGGCCCTAAACCCCTTCTATACCTTTCTTGGCCGCTTCACTAATCTCCTCTTCTTAACCTTCCCACCCCTCTATGTGCCAACTCCACTCTATATGCCGCC TCGCTCATCATCACCCATCACTCTTCCTTCGCTCTTTCTTTCAATCGTCCGGAAGAAGATCCTCCAAATCAATCTCCTTACGCGGACTTCCATGCTTCTG CGGCATTGGCGAATTGGTACGATTGAATTTCCTCCCTTGACAAGATCCCTCTCTTCTTTCATCCATTCCAACCCTTCTTTTAACAACATTGACGATGCAT TAGCTACGTTCAACGAGTTCTTGTCCGTGAATCCTAGGCCTTCTATTGTCGCGTTTGGTCAATTGGTATCTTCAGTTATGAGAATGAAGCGCCCTGACAC GGCCGTTTCTTTGCTAAAGCGAATGGAATCGGCTGGAATCAGACATGATCTTTATACGCTGAGCATGTTGAGTAATTGCTTCTGTCGAATTGGTCGTGTG GATTACGGGTTTTCTACTTTGGGGAAAGTTTTCAAGGTTGGGTTTGAACCCAATGTGGTTATGTTCACTACCTTGATTGATGGGTTGTGTAAGGATGGTA ATGTAGTTCAAGCTGTGAAGCTGTTGGATAAGATTGCAGCCGAAGGTTATGCAATGAACTCATTCACTTACAACACGATTGTTAATGGGCTGTGCAAGCT AGGGGAAACCAGTGAGAGTCTCAGGCTGCTCAAGAAAATGGAGGATTTAGGCTGTTGCCCTGATGTGGTTACTTATAACACAATCATGGGTAGCCTTTGT AGGGATATGTTGTTGAGTGAAGCTTTGGTTGTCCTATCCAAGATGAAAGGTAAAGGAGTTTCACCGGATGTTGTCACTTATAATTGCTTAATTCGTTGTT TATGTGATTTAAGGCAGTGGGAAAGATCCATAATGTTGTTGAATGAGATGGTGGAGTTGAATATTTTACCTTCTGTAGTTACCTGCAACACATTGGTTGA TGCGTATTGCAAGGAAGGGAAGGTTTCTGAGGCTAGAACTATATTAGGAATGATGATACGAAAAGGAGTGCACCCCGATATTGTTACGTTCAGTTCATTG ATAGAAGGATATTGTTTGCGAGGCCAACTAGATGAAGCGAAGAAGTTATTCGATAGTATTAGAAGCATGGGACACAAACAAGATGTTTATTGTTATAGCA TTATGATAAATGGTTATTGTGGAAAGGAAAGATTGGACGAGGCGAAAAAGTTGTTTGATGAAATGCCTCAAAATGGTCTGGTTCCAAATAAAGTTACTTA TACTGCTCTCATGGATGGCTTCTGTCGGGAAGGAAGAACTAGAGATGCCCAAGCACTGTTGAAGAACATGTGTGATCGAGGTTACGTGCCTGATATCAGG ACATACAATGTCTTGCTTGATGACTTGCTGAAGAAAGGCCAGCTGGATGCAGCACGGACTCTATTTGAAGTGTTGGAATGCAGTTGGCTGAGGCCTAGTG TTGTTACATATAATACGTTGATCGATGGTTTATACAAAGCTGGTCAGCCTGATAGTGCGAAAGAGATATTCTCCAGGTTGTGTGTTAATAACTACTTACA ACCTAATACTATTACATATAACATTGTCATTAGTGGACATTGCGAGCTAGGTTTGGTAGATGAGGCGTATGAGTTGTTCAGGAAAATGGAGGATAGTGGT TGCCTCCCTACTCGTGGCTCTTATAATGTCCTTATCCGTGGTTTTCTTCGGCATAAAGATGCATTAGATGCAGTGGAACTCATCCAGGATATGATGTCTA GGGGTTTTTCAGTGGACGGGGCAACAATGATGTTGTTGATAGAGTTGTTGCCTAAACTCCAGCTGAATCATCCGGTACTTAGAAAGCTACTAGGTTCTGA TGAGGCAATGACAAAGAGGTGTGAGGATAACATTTCAAATTCTTACGATTCATTAAATTTTTCATCAGTTGAGGACGATTTTTCAAATCTAAGTTAA
AA sequence Show only first row Show all	>Lus10029737 pacid=23151946 polypeptide=Lus10029737 locus=Lus10029737.g ID=Lus10029737.BGIv1.0 annot-version=v1.0 MSLIGIRLPIRAPPPPPQPPQPPQPLSNWNNLLPALNPFYTFLGRFTNLLFLTFPPLYVPTPLYMPPRSSSPITLPSLFLSIVRKKILQINLLTRTSMLL RHWRIGTIEFPPLTRSLSSFIHSNPSFNNIDDALATFNEFLSVNPRPSIVAFGQLVSSVMRMKRPDTAVSLLKRMESAGIRHDLYTLSMLSNCFCRIGRV DYGFSTLGKVFKVGFEPNVVMFTTLIDGLCKDGNVVQAVKLLDKIAAEGYAMNSFTYNTIVNGLCKLGETSESLRLLKKMEDLGCCPDVVTYNTIMGSLC RDMLLSEALVVLSKMKGKGVSPDVVTYNCLIRCLCDLRQWERSIMLLNEMVELNILPSVVTCNTLVDAYCKEGKVSEARTILGMMIRKGVHPDIVTFSSL IEGYCLRGQLDEAKKLFDSIRSMGHKQDVYCYSIMINGYCGKERLDEAKKLFDEMPQNGLVPNKVTYTALMDGFCREGRTRDAQALLKNMCDRGYVPDIR TYNVLLDDLLKKGQLDAARTLFEVLECSWLRPSVVTYNTLIDGLYKAGQPDSAKEIFSRLCVNNYLQPNTITYNIVISGHCELGLVDEAYELFRKMEDSG CLPTRGSYNVLIRGFLRHKDALDAVELIQDMMSRGFSVDGATMMLLIELLPKLQLNHPVLRKLLGSDEAMTKRCEDNISNSYDSLNFSSVEDDFSNLS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63130			Tetratricopeptide repeat (TPR)...		Lus10029737 [exp]	0	1
AT3G26540			Tetratricopeptide repeat (TPR)...		Lus10015584 [exp]	1.0	0.9319
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10042768 [exp]	2.4	0.9202
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Lus10014027 [exp]	4.9	0.9091
AT5G58450			Tetratricopeptide repeat (TPR)...		Lus10026402 [exp]	5.1	0.9234
AT5G59980			Polymerase/histidinol phosphat...		Lus10028138 [exp]	6.9	0.9072
AT5G65560			Pentatricopeptide repeat (PPR)...		Lus10026558 [exp]	9.5	0.8889
AT2G31340		EMB1381	embryo defective 1381 (.1)		Lus10035336 [exp]	12.4	0.8884
AT4G13650			Pentatricopeptide repeat (PPR)...		Lus10018978 [exp]	14.5	0.8789
AT5G48120			ARM repeat superfamily protein...		Lus10011436 [exp]	14.5	0.8925
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10038858 [exp]	15.0	0.8908

Compare expression of checked genes

Lus10029737 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.