Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44000 269 / 1e-90 unknown protein AT4G11910 168 / 5e-51 SGR2, STAY-GREEN2 unknown protein AT4G22920 163 / 5e-49 ATNYE1, SGR1, STAY-GREEN1 non-yellowing 1 (.1) AT4G11911 157 / 8e-47 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042769 [exp] 448 / 9e-162 AT1G44000 247 / 2e-82 unknown protein Lus10001194 [exp] 177 / 3e-54 AT4G22920 350 / 7e-122 non-yellowing 1 (.1) Lus10024484 [exp] 175 / 2e-53 AT4G22920 340 / 4e-118 non-yellowing 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G184700 [exp] 290 / 5e-99 AT1G44000 279 / 8e-95 unknown protein Potri.002G075700 [exp] 275 / 2e-93 AT1G44000 259 / 2e-87 unknown protein Potri.003G119600 [exp] 179 / 3e-55 AT4G22920 352 / 4e-123 non-yellowing 1 (.1) Potri.001G112600 [exp] 174 / 4e-53 AT4G22920 336 / 7e-117 non-yellowing 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029738 pacid=23152099 polypeptide=Lus10029738 locus=Lus10029738.g ID=Lus10029738.BGIv1.0 annot-version=v1.0 ATGAAGGCGACGAGGAAAAAGCTCGGTTTGTCAGTCCCAACTCTTCCCATGGCATGCCATTCTGCTTTCCTAGCTCCTCCTTCCCCTTCTTCATTCTTCT TCACCACTCACAACATTAACGCTCAGAACTCCTTCAGATTACGTAAATTGAGGCTCTTCCCTCTCGCCTTCGCCGCCATTAATGCTGCCGATACCACCAC TTCTTCCTTCAATGGTCTTGTACCCGAGGCAGTCAAAATTCTGATTCCTACGGCAACATTCAATGCTTCGAAGCTCAAAGTTGTGGAAGCGGAGAATGAC TACTCAGGAATCATCCCTAGAACTTACATTCTGTCTCACTGTGACTTCACCGCAAACTTAACCTTGACTATTTCCAGTGTCATCAACGTCGATCAGCTAA ATGGGTGGTATAGCAAGGATGATGTGGTTGCTGAGTGGAAGAAAGTTGAAGGGGATTTGTGCCTGCACATCCATTGTTACGTCAGTGGTCCAAATCTAAA GCTGGATCTTGCTGCTGAGCTCAGATATCACATATTCTCCAAAGAGATGCCTTTGGTACTCCAAGCTGTGCTATACGGTGATGCAGAGCTTTTCCAGGCT AATCCGGAGCTGAAAGATGCTCAAGTTCGGGTGTACTTCCATTCTAGCTCCCCGAAATACAATCGAATTGAATGTTGGGGACCCCTTAAGGATGCTGCTC AGGGAAGACGGGCAGTACAATACAGAAACCTTTTACCCGAAAATAAAAGCGGTGGAGGAACGAGGAAACGGGTGCGGCCAACGTCCATCTTTCAGACATT GTTTGCGTTCTTTCTCTGA
AA sequence Show only first row Show all	>Lus10029738 pacid=23152099 polypeptide=Lus10029738 locus=Lus10029738.g ID=Lus10029738.BGIv1.0 annot-version=v1.0 MKATRKKLGLSVPTLPMACHSAFLAPPSPSSFFFTTHNINAQNSFRLRKLRLFPLAFAAINAADTTTSSFNGLVPEAVKILIPTATFNASKLKVVEAEND YSGIIPRTYILSHCDFTANLTLTISSVINVDQLNGWYSKDDVVAEWKKVEGDLCLHIHCYVSGPNLKLDLAAELRYHIFSKEMPLVLQAVLYGDAELFQA NPELKDAQVRVYFHSSSPKYNRIECWGPLKDAAQGRRAVQYRNLLPENKSGGGTRKRVRPTSIFQTLFAFFL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44000			unknown protein		Lus10029738 [exp]	0	1
AT1G44000			unknown protein		Lus10042769 [exp]	1.0	0.9249
AT5G48330		RUG2	RCC1/UVR8/GEF-like 2, Regulato...		Lus10012298 [exp]	1.7	0.9089
AT1G72030			Acyl-CoA N-acyltransferases (N...		Lus10042534 [exp]	2.8	0.9178
AT1G10830		Z-ISO1.2, Z-ISO...	15-cis-zeta-carotene isomerase...		Lus10041258 [exp]	5.8	0.8576
AT5G57180		CIA2	chloroplast import apparatus 2...		Lus10015538 [exp]	7.5	0.8804
AT5G45170			Haloacid dehalogenase-like hyd...		Lus10018280 [exp]	7.7	0.8887
AT5G17670			alpha/beta-Hydrolases superfam...		Lus10005666 [exp]	8.4	0.9025
AT3G49190			O-acyltransferase (WSD1-like) ...		Lus10017718 [exp]	8.5	0.8984
AT2G46735			unknown protein		Lus10030208 [exp]	9.4	0.8834
AT2G20830			transferases;folic acid bindin...		Lus10018558 [exp]	10.0	0.8718

Compare expression of checked genes

Lus10029738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.