Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21380 475 / 3e-164 Target of Myb protein 1 (.1) AT1G76970 451 / 6e-156 Target of Myb protein 1 (.1) AT4G32760 322 / 1e-102 ENTH/VHS/GAT family protein (.1.2) AT3G08790 289 / 1e-90 ENTH/VHS/GAT family protein (.1) AT2G38410 246 / 7e-74 ENTH/VHS/GAT family protein (.1) AT5G01760 215 / 3e-63 ENTH/VHS/GAT family protein (.1) AT5G63640 199 / 3e-58 ENTH/VHS/GAT family protein (.1) AT5G16880 119 / 4e-29 Target of Myb protein 1 (.1.2.3) AT1G06210 81 / 2e-16 ENTH/VHS/GAT family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042770 [exp] 811 / 0 AT1G21380 514 / 4e-180 Target of Myb protein 1 (.1) Lus10018948 [exp] 477 / 3e-166 AT1G21380 439 / 1e-151 Target of Myb protein 1 (.1) Lus10028649 [exp] 483 / 4e-164 AT1G21380 452 / 7e-152 Target of Myb protein 1 (.1) Lus10022140 [exp] 343 / 2e-110 AT4G32760 637 / 0.0 ENTH/VHS/GAT family protein (.1.2) Lus10014155 [exp] 273 / 2e-84 AT5G01760 439 / 5e-146 ENTH/VHS/GAT family protein (.1) Lus10025264 [exp] 274 / 6e-84 AT2G38410 406 / 1e-132 ENTH/VHS/GAT family protein (.1) Lus10022753 [exp] 271 / 1e-83 AT5G01760 434 / 3e-144 ENTH/VHS/GAT family protein (.1) Lus10011689 [exp] 214 / 1e-61 AT3G08790 461 / 5e-154 ENTH/VHS/GAT family protein (.1) Lus10022667 [exp] 193 / 7e-56 AT5G63640 450 / 1e-156 ENTH/VHS/GAT family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G184900 [exp] 593 / 0 AT1G21380 473 / 2e-163 Target of Myb protein 1 (.1) Potri.002G075500 [exp] 587 / 0 AT1G21380 471 / 2e-162 Target of Myb protein 1 (.1) Potri.018G039100 [exp] 353 / 1e-114 AT4G32760 561 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.006G241000 [exp] 346 / 5e-112 AT4G32760 630 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.016G131900 [exp] 287 / 6e-89 AT2G38410 406 / 2e-132 ENTH/VHS/GAT family protein (.1) Potri.006G106500 [exp] 277 / 2e-85 AT2G38410 407 / 2e-133 ENTH/VHS/GAT family protein (.1) Potri.T010700 [exp] 199 / 2e-58 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1) Potri.T005401 [exp] 199 / 2e-58 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1) Potri.004G138600 [exp] 190 / 5e-55 AT5G63640 447 / 1e-155 ENTH/VHS/GAT family protein (.1) Potri.013G082500 [exp] 128 / 2e-32 AT5G16880 553 / 0.0 Target of Myb protein 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03127 [flax] [poplar] GAT GAT domain CL0009 [flax] [poplar] ENTH_VHS PF00790 [flax] [poplar] VHS VHS domain
Representative CDS sequence Show only first row Show all	>Lus10029739 pacid=23152008 polypeptide=Lus10029739 locus=Lus10029739.g ID=Lus10029739.BGIv1.0 annot-version=v1.0 ATGGCTAATAATAATGCGGCAGCGTGTGCCGAGAGGGCCACTAGCGATATGCTGATCGGTCCTGATTGGGCTATCAACATTGAGCTATGCGATATCATTA ACATGGATCCTAGGCAAGCAAAAGATGCTTTGAAAGTACTGAAAAAGAGGCTGGGCCACAAGAATCATAAAATACAGCTACTAGCTCTTGTCGCACTGGA GGCCCTTAGCAAAAATTGTGGTGAGAATGTGTTTCAGCAGATTGTCGAGCGAGATATCTTGCACGATATGGTTAAAATTGTGAAGAAGAAGCCAGACTTG GGTGTAAGAGAAAAGATACTTACCCTGATAGACACATGGCAAGAAGCTTTCGGGGGTGCAAGGGGGAGGTATCCTCAGTACTATGCTGCTTACAATGAGC TGAGGGCTGCTGGAATTGAATTCCCACCAAGGATAGAAAATAGTGTGCCACTATTCACTCCTCCCCAGACACAGCCGATAGCTTACACATCTGCAGCTTA TGAAGATGCTGCCATTCAGGCGTCACTCCAGGCTGATACTTCTGGCCTGAGCTTACCAGAGATTGAGAATGCGCGAGGTGTAGCTGAAGTATTGATGGAA ATGCTTGGTGCCTTGGATCCTAAGAATCGTGAGGGTGTGAAGCAAGAACTGATAGTAGACCTAGTAGACCAGTGCCGCTCCTATCTACAGAGAGCAATTC TTCTTGTGAACAACACAACGGATGAAGAACTTTTAGCACAGGGACTGACACTGAATGATAGCTTGCAGCGCGTCATTCGCGTTCATGATGATATTGCCAG CGGAACTGCTGCTCAAGTAGGGACACAAAGTGAAAGTGAACCTTCATTGGTACCACTTGTTAATGTTAATCAAGAAGACGATGACTCTGACGACGACTTC TCCCAGTTGGCTCATAGATCTTCACAAGGACAAGGTCGTAAACCAACTAGCGTCAGAACGCCAACGAACATCGTCACATCATTCCTTCCTCCTCCGCCTT CTTCGAAGAAGCCAGTGGCCTCAGATACAGCCGCGGTTGACTACCTCAGCGGTGACTATTACAAATCAGAACCAGGATTCACTCGCACATCAGAATCGGT TCCTTTCTCTGTTCCTGCACATTCCAACTCACAGTCTTCCCCTCCTGAATACTCGCCTACATTGTCTCCTCCTCCCCCTCAACCTCCCATGTTCGATGGG AAGCCCGTATTCGACGAACCACTCCCACCGAGCCGGTTTTCTGATCAGATGCCTCCAGCTCCTTGGGAAACGCCCTCGGTCGTGGACCTTCCTCCTCCTC CTTCCAAGCATAATCAGAGACAGCAATTCTTTGATCAGGCTAGTGCTCCTCATGGTGGAAGTAGCAGCTCCGGCTCCTCATACGATGGCTTAGTTGGAAA AACTCAGAACATGTCTATTGGTTTGTCCACCCCGAAGAAGGAAGCAAAGCCGGAGGATGTCCTGTTTAAGGATCTTGTGGATTTTGCGAAAGCCAAGTCA ACGAAACCTCCCGGCAGCAGACCGTTATGA
AA sequence Show only first row Show all	>Lus10029739 pacid=23152008 polypeptide=Lus10029739 locus=Lus10029739.g ID=Lus10029739.BGIv1.0 annot-version=v1.0 MANNNAAACAERATSDMLIGPDWAINIELCDIINMDPRQAKDALKVLKKRLGHKNHKIQLLALVALEALSKNCGENVFQQIVERDILHDMVKIVKKKPDL GVREKILTLIDTWQEAFGGARGRYPQYYAAYNELRAAGIEFPPRIENSVPLFTPPQTQPIAYTSAAYEDAAIQASLQADTSGLSLPEIENARGVAEVLME MLGALDPKNREGVKQELIVDLVDQCRSYLQRAILLVNNTTDEELLAQGLTLNDSLQRVIRVHDDIASGTAAQVGTQSESEPSLVPLVNVNQEDDDSDDDF SQLAHRSSQGQGRKPTSVRTPTNIVTSFLPPPPSSKKPVASDTAAVDYLSGDYYKSEPGFTRTSESVPFSVPAHSNSQSSPPEYSPTLSPPPPQPPMFDG KPVFDEPLPPSRFSDQMPPAPWETPSVVDLPPPPSKHNQRQQFFDQASAPHGGSSSSGSSYDGLVGKTQNMSIGLSTPKKEAKPEDVLFKDLVDFAKAKS TKPPGSRPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21380			Target of Myb protein 1 (.1)		Lus10029739 [exp]	0	1
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Lus10029591 [exp]	1.0	0.9387
AT2G31390		STH	pfkB-like carbohydrate kinase ...		Lus10009526 [exp]	2.8	0.9331
AT1G14780			MAC/Perforin domain-containing...		Lus10037426 [exp]	3.2	0.9154
AT4G36945			PLC-like phosphodiesterases su...		Lus10000092 [exp]	6.0	0.9205
AT1G28200		FIP1	FH interacting protein 1 (.1)		Lus10000640 [exp]	7.5	0.9126
AT4G40050			Protein of unknown function (D...		Lus10012756 [exp]	9.9	0.8999
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10008187 [exp]	10.6	0.9237
AT4G26750		EXT-like	extensin-like, hydroxyproline-...		Lus10033994 [exp]	14.3	0.8901
AT5G53330			Ubiquitin-associated/translati...		Lus10038829 [exp]	14.7	0.9052
AT1G63830			PLAC8 family protein (.1.2.3)		Lus10017509 [exp]	15.5	0.9176

Compare expression of checked genes

Lus10029739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.