Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09350 254 / 2e-85 NdhT, CRRJ NADH dehydrogenase-like complex T, CHLORORESPIRATORY REDUCTION J, Chaperone DnaJ-domain superfamily protein (.1) AT1G80030 62 / 4e-11 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT3G17830 58 / 1e-09 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G22360 57 / 3e-09 DNAJ heat shock family protein (.1) AT1G28210 54 / 2e-08 ATJ1 DNAJ heat shock family protein (.1.2) AT1G56300 51 / 5e-08 Chaperone DnaJ-domain superfamily protein (.1) AT3G13310 51 / 7e-08 Chaperone DnaJ-domain superfamily protein (.1) AT4G39960 52 / 1e-07 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G35720 52 / 1e-07 OWL1 ORIENTATION UNDER VERY LOW FLUENCES OF LIGHT 1, DNAJ heat shock N-terminal domain-containing protein (.1) AT3G08970 52 / 1e-07 TMS1, ATERDJ3A THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042771 [exp] 418 / 1e-149 AT4G09350 288 / 8e-99 NADH dehydrogenase-like complex T, CHLORORESPIRATORY REDUCTION J, Chaperone DnaJ-domain superfamily protein (.1) Lus10040777 [exp] 59 / 4e-10 AT5G59610 246 / 6e-81 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10016510 [exp] 59 / 4e-10 AT5G59610 252 / 2e-83 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10017263 [exp] 57 / 1e-09 AT4G36040 106 / 2e-29 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10041906 [exp] 55 / 2e-09 AT4G36040 144 / 8e-45 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10003380 [exp] 57 / 3e-09 AT3G08970 615 / 0.0 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Lus10011484 [exp] 57 / 4e-09 AT1G80030 638 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Lus10002852 [exp] 57 / 4e-09 AT3G08970 600 / 0.0 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Lus10000631 [exp] 56 / 7e-09 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G109000 [exp] 269 / 4e-91 AT4G09350 310 / 4e-107 NADH dehydrogenase-like complex T, CHLORORESPIRATORY REDUCTION J, Chaperone DnaJ-domain superfamily protein (.1) Potri.003G031800 [exp] 62 / 9e-11 AT1G80030 607 / 0.0 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) Potri.010G113400 [exp] 57 / 8e-10 AT1G71000 148 / 2e-45 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G073900 [exp] 59 / 9e-10 AT2G22360 659 / 0.0 DNAJ heat shock family protein (.1) Potri.007G094900 [exp] 59 / 1e-09 AT2G22360 688 / 0.0 DNAJ heat shock family protein (.1) Potri.016G120000 [exp] 57 / 4e-09 AT3G08970 479 / 6e-164 THERMOSENSITIVE MALE STERILE 1, DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G113100 [exp] 54 / 4e-09 AT2G17880 139 / 6e-43 Chaperone DnaJ-domain superfamily protein (.1) Potri.001G072700 [exp] 55 / 8e-09 AT5G59610 254 / 3e-84 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.002G020800 [exp] 54 / 1e-08 AT2G17880 110 / 3e-31 Chaperone DnaJ-domain superfamily protein (.1) Potri.004G172300 [exp] 53 / 1e-08 AT2G17880 115 / 2e-33 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10029740 pacid=23152078 polypeptide=Lus10029740 locus=Lus10029740.g ID=Lus10029740.BGIv1.0 annot-version=v1.0 ATGGCTTTCACAGCTACTCCATATCCGGCACCATTCGGAGCCACAAACAGGGACAGCCTCCATACTCGTAGACCAATCTCCCAAACCACAACGACAACAA AAAGATGGACTCGAACAACTCGTGGCAACATCTATACTCGTGTTGTAGTAACTGCAGCTAAAGAGCCACAAGGACGGCAAAGGGCACCACCAGGAGTTGA CACCAGAATTCACTGGGACAACGAAGATGAAGGCTGGGTTGGAGGTACATCATCCACTTCTTCCGACTACAAGGATATTCCACTCGGCGAATCCTTTGCT GATTTGCTCAAGGATGCTTCTGATTCTCATTACCAGTTCCTCGGTGTACAGCCGGAAGCAGACTTGGAAGAGATTAAAGCAGCATTCCGGAGGCTGTCCA AGGAGTACCATCCGGACACAACATCGCTCCCTCTGAAAACTGCTCTCGAAAAGTTCATGAGGTTGAGACAAATCTATGCTGTCCTAACCGATGTGGAGAA GCGCAAATTCTACGACTGGACACTTGCTCAGGAGGCTGCTAGCCGACAAGCAGAAAAGATGAGAATCAAACTGGAGGACCCCAGGGACCAGGATTTCGCC AACTACATCCCGGTTCCTGACACGGTCGATCGTCTTGGAGGGAAAAACCTGGAGCTGAGTGAACAAGCCATGTCTGCTCTTACCTTTGATGCTATAGTAA TCTGTTTCGCTATCTGCTGCATAATTTACGTGGTGGTGTTCAAGGAGCCATATTAG
AA sequence Show only first row Show all	>Lus10029740 pacid=23152078 polypeptide=Lus10029740 locus=Lus10029740.g ID=Lus10029740.BGIv1.0 annot-version=v1.0 MAFTATPYPAPFGATNRDSLHTRRPISQTTTTTKRWTRTTRGNIYTRVVVTAAKEPQGRQRAPPGVDTRIHWDNEDEGWVGGTSSTSSDYKDIPLGESFA DLLKDASDSHYQFLGVQPEADLEEIKAAFRRLSKEYHPDTTSLPLKTALEKFMRLRQIYAVLTDVEKRKFYDWTLAQEAASRQAEKMRIKLEDPRDQDFA NYIPVPDTVDRLGGKNLELSEQAMSALTFDAIVICFAICCIIYVVVFKEPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Lus10029740 [exp]	0	1
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Lus10042771 [exp]	1.0	0.9809
AT1G79510			Uncharacterized conserved prot...		Lus10001766 [exp]	1.4	0.9738
AT2G36800		UGT73C5, DOGT1	UDP-GLUCOSYL TRANSFERASE 73C5,...		Lus10003323 [exp]	2.0	0.9558
AT1G79510			Uncharacterized conserved prot...		Lus10009597 [exp]	2.4	0.9621
AT3G56290			unknown protein		Lus10029051 [exp]	3.9	0.9516
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Lus10032369 [exp]	3.9	0.9305
AT2G15020			unknown protein		Lus10013880 [exp]	4.2	0.9469
AT3G52520			unknown protein		Lus10029420 [exp]	4.7	0.9191
AT4G31870		ATGPX7	glutathione peroxidase 7 (.1)		Lus10026887 [exp]	4.7	0.9413
AT5G67370			Protein of unknown function (D...		Lus10011087 [exp]	4.9	0.9452

Compare expression of checked genes

Lus10029740 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.