Plant FIBer expression Database

Lus10029741 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G71730 125 / 6e-37 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042772
[exp]
328 / 4e-116 AT1G71730 127 / 2e-36 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G198100
[exp]
146 / 4e-45 AT1G71730 114 / 2e-32 unknown protein
Potri.002G063100
[exp]
141 / 6e-43 AT1G71730 133 / 8e-40 unknown protein
PFAM info
Representative CDS sequence
>Lus10029741 pacid=23152139 polypeptide=Lus10029741 locus=Lus10029741.g ID=Lus10029741.BGIv1.0 annot-version=v1.0
ATGCATAGACGAGCACACCCTTCTCTCTGCAAATCTCTGTTCCGATTCTCCAGTAAGTCTCGGCAAACATCTCTTCCGTCTTCCCCCGATTCGATCCAAC
CGATTCATGGATTCATCAACCTCCTCCCGCACACGATCCTCCGAAATTTTCACCTGGTACCGAACCCTGCCGCAGAGCATCTTCAGACTACTCAATCGTT
TCGCCAAACACAGTGCGGGAGAAGAAGATTGAGCTCGGAGCCGGAGTTGGATGTGGACAGGGAGGTAGACATGATAAACCTCAAGTTCGCAGAGGCAAGA
GAGGAGCTGGAGATGGCCATGGACGCCAAAGAGACCGTCTATTTCGACGAGGAGGCTGAATGTGCGAGAGATGCAGCGAACGAGGTTCTGAGCATGTACG
ATTCGCTTCTTGGGAAGTTTCCAGAGACTAAGAAGGGAGTCGTCCAGAGGTCCATGGGGCTCAAGATGGAGCAGTTGAAGGCAGAAGTTAAACAGTTGGA
GGATTAG
AA sequence
>Lus10029741 pacid=23152139 polypeptide=Lus10029741 locus=Lus10029741.g ID=Lus10029741.BGIv1.0 annot-version=v1.0
MHRRAHPSLCKSLFRFSSKSRQTSLPSSPDSIQPIHGFINLLPHTILRNFHLVPNPAAEHLQTTQSFRQTQCGRRRLSSEPELDVDREVDMINLKFAEAR
EELEMAMDAKETVYFDEEAECARDAANEVLSMYDSLLGKFPETKKGVVQRSMGLKMEQLKAEVKQLED

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G71730 unknown protein Lus10029741
[exp]
0 1
AT5G20720 CHCPN10, ATCPN2... CHLOROPLAST CHAPERONIN 10, cha... Lus10013607
[exp]
2.4 0.8115
AT4G15770 RNA binding (.1) Lus10000507
[exp]
2.6 0.8141
AT3G10090 Nucleic acid-binding, OB-fold-... Lus10017293
[exp]
3.5 0.8050
AT1G60770 Tetratricopeptide repeat (TPR)... Lus10013047
[exp]
9.8 0.7542
AT1G05600 EMB3101 EMBRYO DEFECTIVE 3101, Tetratr... Lus10030200
[exp]
15.9 0.7278
AT1G61570 TIM13 translocase of the inner mitoc... Lus10017352
[exp]
16.9 0.7437
AT2G03510 SPFH/Band 7/PHB domain-contain... Lus10004648
[exp]
20.1 0.7239
AT5G06760 AtLEA4-5, LEA4-... Late Embryogenesis Abundant 4-... Lus10004182
[exp]
22.9 0.6910
AT3G05560 Ribosomal L22e protein family ... Lus10026555
[exp]
25.7 0.7012
AT1G54380 spliceosome protein-related (.... Lus10022813
[exp]
26.3 0.6810

Lus10029741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.