Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71740 77 / 5e-19 unknown protein AT1G49000 52 / 4e-09 unknown protein AT3G14760 49 / 7e-08 unknown protein AT3G18560 44 / 5e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042773 [exp] 174 / 3e-57 AT1G71740 81 / 8e-21 unknown protein Lus10034266 [exp] 49 / 8e-08 AT1G71740 53 / 4e-09 unknown protein Lus10041497 [exp] 49 / 9e-08 AT1G71740 51 / 2e-08 unknown protein Lus10042496 [exp] 47 / 8e-07 AT3G14760 65 / 1e-12 unknown protein Lus10038145 [exp] 43 / 2e-05 AT3G14760 70 / 1e-14 unknown protein Lus10032453 [exp] 41 / 0.0001 AT1G49000 70 / 1e-14 unknown protein Lus10042953 [exp] 40 / 0.0002 AT1G49000 67 / 8e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G198200 [exp] 87 / 6e-23 AT1G71740 112 / 5e-33 unknown protein Potri.002G062950 [exp] 62 / 2e-13 AT1G71740 84 / 5e-22 unknown protein Potri.010G130600 [exp] 50 / 4e-08 AT1G49000 77 / 2e-18 unknown protein Potri.011G103500 [exp] 50 / 5e-08 AT3G14760 121 / 6e-35 unknown protein Potri.004G088300 [exp] 48 / 8e-08 AT1G49000 50 / 4e-08 unknown protein Potri.017G128700 [exp] 45 / 9e-07 AT3G18560 48 / 3e-07 unknown protein Potri.012G059500 [exp] 43 / 9e-06 AT1G49000 111 / 1e-31 unknown protein Potri.001G382800 [exp] 43 / 2e-05 AT3G14760 109 / 3e-30 unknown protein Potri.006G226200 [exp] 40 / 0.0002 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029742 pacid=23152006 polypeptide=Lus10029742 locus=Lus10029742.g ID=Lus10029742.BGIv1.0 annot-version=v1.0 ATGGCTCGTCTGCTACAATTGCGACACATCATGATGACCACCAATCAATTCTCCCTCACGACGTTCCAGGCTGCTATGGCTGCAATGTCCCTCCTGGCTC TATGTGCATTTACATTGTTCCTCTGCGCTTCTCATGGCCGGAAGCTACGACGCCACTGGGGATCCTACTGCAGCTATGGGTTCGTCCACGACCCGGTTAT TCAGCTAGACAGTAATCCGAACACGATGATGGTGGGTTCTGATGATGATGATCAGCAGGAGCAGGTGTGGAAGAAGAATATTCTGATGGGTGGTAAGTGC CAGCTCCCTGACTTTTCGGGGGTCATCATCTACGACTCTGATGGCAATCATGTCGCTCCTCCTTCTAGGAAAGATCGTCCCTTGCAGCTCACCTGGAAAT GA
AA sequence Show only first row Show all	>Lus10029742 pacid=23152006 polypeptide=Lus10029742 locus=Lus10029742.g ID=Lus10029742.BGIv1.0 annot-version=v1.0 MARLLQLRHIMMTTNQFSLTTFQAAMAAMSLLALCAFTLFLCASHGRKLRRHWGSYCSYGFVHDPVIQLDSNPNTMMVGSDDDDQQEQVWKKNILMGGKC QLPDFSGVIIYDSDGNHVAPPSRKDRPLQLTWK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71740			unknown protein		Lus10029742 [exp]	0	1
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10010871 [exp]	1.4	0.9641
AT2G24370			Protein kinase protein with ad...		Lus10040573 [exp]	2.8	0.9534
AT2G35270	AT-hook	GIK, 2-ATH, AHL...	GIANT KILLER, Predicted AT-hoo...		Lus10030966 [exp]	4.6	0.9532
AT2G27430			ARM repeat superfamily protein...		Lus10001881 [exp]	4.9	0.9239
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Lus10038088 [exp]	5.5	0.9176
AT1G02260			Divalent ion symporter (.1)		Lus10027497 [exp]	9.5	0.9199
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Lus10039133 [exp]	9.7	0.9133
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10017442 [exp]	10.1	0.9312
AT2G40260	GARP		Homeodomain-like superfamily p...		Lus10007513 [exp]	11.1	0.9395
AT3G21540			transducin family protein / WD...		Lus10022194 [exp]	11.6	0.9346

Compare expression of checked genes

Lus10029742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.