Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42860 225 / 1e-71 unknown protein AT1G45688 225 / 2e-71 unknown protein AT4G35170 151 / 3e-43 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G24600 130 / 7e-34 Late embryogenesis abundant protein, group 2 (.1) AT2G41990 121 / 4e-32 unknown protein AT3G08490 78 / 2e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010232 [exp] 278 / 3e-92 AT1G45688 416 / 3e-146 unknown protein Lus10009749 [exp] 229 / 2e-73 AT5G42860 256 / 2e-84 unknown protein Lus10023652 [exp] 174 / 1e-51 AT1G45688 183 / 2e-55 unknown protein Lus10034926 [exp] 169 / 8e-50 AT1G45688 182 / 5e-55 unknown protein Lus10025793 [exp] 165 / 2e-48 AT1G45688 221 / 5e-70 unknown protein Lus10022644 [exp] 164 / 7e-48 AT4G35170 279 / 4e-93 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10035869 [exp] 162 / 4e-47 AT1G45688 219 / 3e-69 unknown protein Lus10003341 [exp] 126 / 3e-33 AT2G41990 221 / 4e-70 unknown protein Lus10010231 [exp] 99 / 7e-26 AT5G42860 84 / 1e-20 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G045000 [exp] 372 / 2e-129 AT1G45688 273 / 4e-90 unknown protein Potri.014G026800 [exp] 258 / 9e-85 AT1G45688 301 / 2e-101 unknown protein Potri.002G124600 [exp] 255 / 2e-83 AT1G45688 284 / 1e-94 unknown protein Potri.006G160100 [exp] 186 / 1e-56 AT3G24600 184 / 3e-54 Late embryogenesis abundant protein, group 2 (.1) Potri.003G052900 [exp] 176 / 6e-53 AT1G45688 176 / 6e-53 unknown protein Potri.001G183600 [exp] 174 / 7e-52 AT1G45688 185 / 4e-56 unknown protein Potri.004G180900 [exp] 172 / 3e-51 AT2G41990 256 / 1e-84 unknown protein Potri.009G140600 [exp] 162 / 1e-47 AT2G41990 232 / 5e-75 unknown protein Potri.009G061300 [exp] 94 / 9e-22 AT3G08490 209 / 7e-66 unknown protein Potri.001G267200 [exp] 92 / 9e-21 AT3G08490 196 / 6e-61 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10029743 pacid=23152103 polypeptide=Lus10029743 locus=Lus10029743.g ID=Lus10029743.BGIv1.0 annot-version=v1.0 ATGTCGTCGACGTCGGCCCATCTATCAAAGACGGATTCCGAAGTGAGCAGCCTGACCCCTTCTTCTCCAGGGAGGTCGACATCATCTCCGCCGCGAAGCA CCTGTCCAGCTGTCTACTACGTCCAGAGCCCATCACGCGACTCTCACGACGATGGGACGACGACGGGGAAAACAACAACAAACTCTTTCCATTCGACTCC GGTCATTAGCCCGATGGCTTCCCCTCCTCACTCCCAACACTCTAACTCTTCTCTGGGCCCGCACTCCCGCGAATCTTCCTCGACCCGCTTCTCTGATCGT AAGGCTACTCGTGGCCATGGCCGTGGTCGGGGAGCTGGCACTGGCAAGACGTGGAAGGGCTTCGATGCTATTGAAGAAGAAGGCCTCCTCCTTGATCATG ATCTCAGTCCTCATGGAATGACTCGCCGCTGTTATTTTCTCGCTTTTGTTGTCGGGTTTCTCTTGCTTTTCACTCTTTTCTCTCTGATCCTTTGGGGAGC TAGCAAGCCCCAGAAGCCCACCGTTGCCATGAAGAGCATAAAGTTGGATCAATTCATAATACAAGCCGGGGCAGATTTCTCAGGAGTGGCAACCGACATG GTGACGATGAATTGCTCGGTAAAGCTCACTTTCCGAAACACGGCGACGTTTTTTGGTGTTCACGTTACCTCAACACCTCTGGATTTATCCTTCTCTCAGC TAACACTCGCCACTGGCACCATTAAAGAGTTTTATCAGTCCAGGAAGAGCCAGAGAACGGTGACGATAACGGCGAAAGGGAGAAACGTACCGTTGTACGG AGGAGGGGCTACGCTAACGATGGTGAACGGGGCGCCATCTCAGCCGGTCCCGGTGGTGCTGAGCTTGATGGTTCGGTCAAGAGCGTACGTATTAGGGAGA CTGGTCAAGCCCAAGTTTTACAAGAGGGTGCATTGCTCACTGTTGATTGACCCTCGTAAAATCAACGTGGCAATTCCCCTCAAGAACAAGTGTACCTACG AGTAA
AA sequence Show only first row Show all	>Lus10029743 pacid=23152103 polypeptide=Lus10029743 locus=Lus10029743.g ID=Lus10029743.BGIv1.0 annot-version=v1.0 MSSTSAHLSKTDSEVSSLTPSSPGRSTSSPPRSTCPAVYYVQSPSRDSHDDGTTTGKTTTNSFHSTPVISPMASPPHSQHSNSSLGPHSRESSSTRFSDR KATRGHGRGRGAGTGKTWKGFDAIEEEGLLLDHDLSPHGMTRRCYFLAFVVGFLLLFTLFSLILWGASKPQKPTVAMKSIKLDQFIIQAGADFSGVATDM VTMNCSVKLTFRNTATFFGVHVTSTPLDLSFSQLTLATGTIKEFYQSRKSQRTVTITAKGRNVPLYGGGATLTMVNGAPSQPVPVVLSLMVRSRAYVLGR LVKPKFYKRVHCSLLIDPRKINVAIPLKNKCTYE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G45688			unknown protein		Lus10029743 [exp]	0	1
AT1G31690			Copper amine oxidase family pr...		Lus10026757 [exp]	1.0	0.9931
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10039376 [exp]	2.0	0.9751
AT3G44220			Late embryogenesis abundant (L...		Lus10043410 [exp]	2.4	0.9738
AT3G50280			HXXXD-type acyl-transferase fa...		Lus10031149 [exp]	6.0	0.9583
					Lus10011622 [exp]	6.5	0.9548
AT3G28040			Leucine-rich receptor-like pro...		Lus10035687 [exp]	7.7	0.9489
AT1G74920		ALDH10A8	aldehyde dehydrogenase 10A8 (....		Lus10042148 [exp]	8.4	0.9279
AT4G14750		IQD19	IQ-domain 19 (.1)		Lus10021904 [exp]	8.9	0.9604
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10039314 [exp]	11.2	0.9471
AT5G62280			Protein of unknown function (D...		Lus10027191 [exp]	11.5	0.9652

Compare expression of checked genes

Lus10029743 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.