Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77020 450 / 3e-158 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G21080 326 / 5e-109 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT1G76700 325 / 8e-109 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G21510 288 / 4e-95 DNAJ heat shock N-terminal domain-containing protein (.1) AT4G39150 286 / 2e-94 DNAJ heat shock N-terminal domain-containing protein (.1.2) AT2G20560 48 / 5e-06 DNAJ heat shock family protein (.1) AT5G22060 46 / 2e-05 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) AT4G28480 46 / 3e-05 DNAJ heat shock family protein (.1.2) AT1G59725 45 / 5e-05 DNAJ heat shock family protein (.1) AT3G08910 45 / 6e-05 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042774 [exp] 637 / 0 AT1G77020 497 / 1e-176 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10013198 [exp] 360 / 3e-122 AT1G21080 580 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Lus10030713 [exp] 352 / 3e-118 AT1G21080 573 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Lus10028809 [exp] 286 / 2e-94 AT4G39150 517 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10017472 [exp] 286 / 3e-94 AT4G39150 519 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10041972 [exp] 282 / 1e-92 AT4G39150 534 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10017980 [exp] 279 / 2e-91 AT4G39150 532 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10012473 [exp] 86 / 6e-19 AT1G77020 61 / 2e-10 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10008652 [exp] 56 / 3e-08 AT5G22060 300 / 5e-100 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G074600 [exp] 493 / 3e-175 AT1G77020 593 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G185800 [exp] 484 / 1e-171 AT1G77020 582 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G260400 [exp] 363 / 9e-124 AT1G21080 585 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.002G000300 [exp] 355 / 1e-120 AT1G21080 602 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.009G119800 [exp] 283 / 4e-93 AT4G39150 511 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.004G158300 [exp] 269 / 1e-87 AT4G39150 469 / 2e-167 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.008G018800 [exp] 54 / 7e-08 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.010G243100 [exp] 54 / 1e-07 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.009G015700 [exp] 53 / 2e-07 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2) Potri.002G141100 [exp] 52 / 3e-07 AT3G44110 504 / 3e-178 DNAJ homologue 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10029744 pacid=23151981 polypeptide=Lus10029744 locus=Lus10029744.g ID=Lus10029744.BGIv1.0 annot-version=v1.0 ATGGTGAAGGAAACTGAGTACTATGATGTTCTTGGACTGCACCATTCTGCTTCTGACGACGATATTCGTAAGGCTTACTATCTTAAGGAATTGGGAGAAG CATATCAAGTTCTTAGTGACCCAGTTCAGAGAGATGCATACGATCAAAATGGAAAGCATTCTGTATCAAAGGAAACCATGATGGATCCCACAGCTGTGTT TGCTCTCCTCTTTGGAAGTGAACTGTTTGAGGACTACATTGGTCATCTATCAACCGCATCCATGGCAGCTTCTTCTGATTTTCCAGCTGAAGCTGACAAT CCTGATAAGCTCCATGAAAAGCTCAAGGCTGTCCAAAGGGAAAGAGAGGAAAAGCTAGCAAGATTCCTCAGAGAATTTCTTGATCAGTACGTTCGAGGTG ACAAATCCGGATTCGTGAGACGTGCTGAATCTGAAGCCGAACGCCTTTCTCACTCAGATTTTGGAGCAGATATATTACACACCATTGGGTACATATATTC AAGACAAGCAGCTTTGGAGCTTGGGAAGAAAGCCATCTACCTTGGAGTCCCTTTCATGGCAGAATGGGTGCGAAACAAGGGCCATTCCTGGAAGTCACAG ATAACTGCAGCTAAAGGGGCATTCCAGCTGCTCCAGCTTCAAGATGACATTCGGAAGCAGTTCAAGTCCAATGGAACTGTACCGGAGAACGACGTTGAGT CACACCTTAGATTGAACAGGGAAACTCTGATGAGCTCTATGTGGAAGTTGAATGTAGTTGACATTGAAGTAACTCTAATCCATGTCTGCCAAATGGTTTT GAAGGAGAATTATGTGAAGAAGGAAGAACTAAAAGCTCGAGCCACAGCTTTGAAAACTCTTGGAAAGATCTTCCAGGAGGAGAAACAAGCTAGAATCGAG GGACCATCGAATCCAAAGCGCAACCATGATGATGAAGACAGCAGTTCTGATAGCAGCAGTGAAGAAGAAGAGGAACCATCCAGATCACTATCTTACAGAA CTCCTCTTCTCACTCAGGCATTTGAGCGTGAAAAAGATTGGTTGGTTGCAGCAGTTCTGCTTGAAGTAGTGGTATCGCTTGGCGAGAATTACTTTGCTGC TTATCCGTATAATCTTCTTGAGATAGTATGCCCAGATCTTCTTCATAAGCTAAAGTTTCTACATACTTCAACCATTTCGAACTAA
AA sequence Show only first row Show all	>Lus10029744 pacid=23151981 polypeptide=Lus10029744 locus=Lus10029744.g ID=Lus10029744.BGIv1.0 annot-version=v1.0 MVKETEYYDVLGLHHSASDDDIRKAYYLKELGEAYQVLSDPVQRDAYDQNGKHSVSKETMMDPTAVFALLFGSELFEDYIGHLSTASMAASSDFPAEADN PDKLHEKLKAVQREREEKLARFLREFLDQYVRGDKSGFVRRAESEAERLSHSDFGADILHTIGYIYSRQAALELGKKAIYLGVPFMAEWVRNKGHSWKSQ ITAAKGAFQLLQLQDDIRKQFKSNGTVPENDVESHLRLNRETLMSSMWKLNVVDIEVTLIHVCQMVLKENYVKKEELKARATALKTLGKIFQEEKQARIE GPSNPKRNHDDEDSSSDSSSEEEEEPSRSLSYRTPLLTQAFEREKDWLVAAVLLEVVVSLGENYFAAYPYNLLEIVCPDLLHKLKFLHTSTISN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77020			DNAJ heat shock N-terminal dom...		Lus10029744 [exp]	0	1
AT1G77020			DNAJ heat shock N-terminal dom...		Lus10042774 [exp]	1.0	0.9165
AT5G07170			Cell cycle regulated microtubu...		Lus10031109 [exp]	2.4	0.8273
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10041972 [exp]	6.3	0.7509
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10023910 [exp]	6.5	0.7702
AT3G61260			Remorin family protein (.1)		Lus10014785 [exp]	7.5	0.8503
AT4G11290			Peroxidase superfamily protein...		Lus10039681 [exp]	8.1	0.7130
AT1G80170			Pectin lyase-like superfamily ...		Lus10036084 [exp]	10.7	0.7114
AT3G01750			Ankyrin repeat family protein ...		Lus10022330 [exp]	15.0	0.7518
AT4G23820			Pectin lyase-like superfamily ...		Lus10001899 [exp]	15.2	0.7686
AT3G27580		D6PKL3, ATPK7	D6 PROTEIN KINASE LIKE 3, Prot...		Lus10022272 [exp]	15.5	0.8260

Compare expression of checked genes

Lus10029744 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.