Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43900 396 / 3e-134 Protein phosphatase 2C family protein (.1) AT1G43890 339 / 2e-114 ATRAB-C1, RAB18-1, ATRAB18, AtRABC1 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) AT4G31750 342 / 5e-114 WIN2 HOPW1-1-interacting 2 (.1) AT5G10740 332 / 2e-109 Protein phosphatase 2C family protein (.1) AT5G24940 334 / 4e-109 Protein phosphatase 2C family protein (.1) AT5G03530 293 / 2e-96 ATRABALPHA, AtRABC2a, AtRab18B ,ATRAB ALPHA ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) AT5G53140 293 / 8e-94 Protein phosphatase 2C family protein (.1) AT3G09910 266 / 2e-86 AtRab18C, AtRABC2b RAB GTPase homolog C2B (.1.2.3) AT2G20630 191 / 2e-56 PIA1 PP2C induced by AVRRPM1 (.1.2) AT4G28400 191 / 2e-56 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042775 [exp] 566 / 0 AT1G43900 434 / 4e-150 Protein phosphatase 2C family protein (.1) Lus10020104 [exp] 342 / 5e-114 AT4G31750 523 / 0.0 HOPW1-1-interacting 2 (.1) Lus10026908 [exp] 331 / 3e-110 AT4G31750 484 / 1e-174 HOPW1-1-interacting 2 (.1) Lus10026239 [exp] 313 / 1e-103 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1) Lus10042430 [exp] 313 / 2e-103 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1) Lus10014926 [exp] 305 / 1e-99 AT5G53140 448 / 3e-158 Protein phosphatase 2C family protein (.1) Lus10019012 [exp] 305 / 8e-99 AT5G53140 474 / 2e-167 Protein phosphatase 2C family protein (.1) Lus10022608 [exp] 282 / 4e-92 AT5G03530 347 / 4e-123 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10021507 [exp] 281 / 8e-92 AT5G03530 352 / 5e-125 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G186001 [exp] 434 / 1e-150 AT1G43900 422 / 4e-149 Protein phosphatase 2C family protein (.1) Potri.002G074500 [exp] 431 / 5e-149 AT1G43900 429 / 1e-151 Protein phosphatase 2C family protein (.1) Potri.002G074400 [exp] 355 / 1e-120 AT1G43890 363 / 2e-129 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) Potri.006G267600 [exp] 353 / 6e-119 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.018G013900 [exp] 350 / 2e-117 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.007G105500 [exp] 330 / 5e-111 AT1G43890 343 / 1e-121 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) Potri.005G063500 [exp] 330 / 7e-111 AT1G43890 346 / 9e-123 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) Potri.015G019200 [exp] 303 / 3e-98 AT5G53140 492 / 5e-175 Protein phosphatase 2C family protein (.1) Potri.006G121400 [exp] 295 / 2e-97 AT5G03530 335 / 2e-118 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.012G002100 [exp] 300 / 4e-97 AT5G53140 486 / 2e-172 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10029745 pacid=23152097 polypeptide=Lus10029745 locus=Lus10029745.g ID=Lus10029745.BGIv1.0 annot-version=v1.0 ATGGAATCATCTTCATTGGCGTCGGCGTCGGACCAGCAGGAGTTCGACTACTTATTCAAGCTGTTGTTGATTGGTGATTCTGGCGTCGGCAAGAGCACCC TTCTCCTGAGTTTCACTTCCACTTCTTTTGAAGAGCTCTCTCCAACCATTGGTGTTGATTTCAAGGTAAAGCATGTTACAGTTGGTGGGAAGAAGTTGAA GCTTGCTATATGGGACACAGCTGGACAGGAGAGGTTTCGGACTCTAACTAGTTCTTATTATAGAGGAGCTCAAGGGGTTATCATGGTTTATGATGTGACG CGTAGAGAAACTTTCACAAATCTGTCTGACATATGGGCCAAAGAAATTGACCTATACTCAACAAATCAGGACTGCATCAAGATGCTTGTTGGCAACAAAG TCGATAAGGAAAGTGAAAGAGTTGTGACAAAAAAAGAGGGCATCGACTTTGCCAGGGAATATGGATGCTTATTTCTTGAGTGCAGCGCGAAAACCCGCGT GAATGTTGAGCAGTGTTTTGAGGAGCTTGTTTTGAAGATATTGGAAACCCCAAGCTTGATAGCGGAGGGGTCGAGCGGGGTGAAGAGGAAGAATATATTC CAGCAAAAGCCAGCACAGGATGCGTCAGCTAGCGAGCTTCAGCTAGCTACCAATTTCTCACTCTTCCTCTACCTCCCTTCACTAATTAATCAAGCTGTCG GACACTACTCCTTCCTCCTCTGTCGCTTCCGGCGACGCATCCTCTTCTCCTCGGGATGCCGGTGTCGGAGCTTCAAAACCTTCATCCTCCTCCCAACCGC CACAAACCCTCCCCCCCCCCCCACCCCGCCCCAGCCACCCGCTACGGCGGTGAAGCAACCGGAATCGGTTCCGGAGCCTCCTCTTCCTGGGCAGTCCCTG TCCTCCTTGCAGCAGGATGCCGACCTCATGATCTCCAACACCGATGCCGATGCTCTTTTCAGTGGCGGCGGCCTCAGCCGACCTGCCAAATTTAGCTATG GATACTCAAGTTTCAAGGGCAAGAGACCTTCAATGGAGGATTTCTATGAGACGAAAATATCAGAAGTTGATGGTCAGACTGTGGCCTTCTTCGGTGTTTT TGATGGTCATGGTGGTGCCAGGACTGCAGAATACCTCAAAAACAACTTATTCAAGAATTTGAGTAGCCATCCAGGGTTTACCAAGGACACGAAGACAGCA ATTTTTGAAACATTCAGAGACACGGATGCAAACTATCTGAAAGAAGAAGAAGGCCAAAAAGAGGCTGGATCAACTGCATCAACTGCCATGCTTTCAGGAG ACCGACTGCTTGTTGCAAATGTTGGAGACTCAAGAGTGGTTGCCAGCAGAGCTGGTTCAGCTATCCCGTTGTCCATGGATCACAAACCTGATAGAACTGA TGAACGCCAAAGGATTGAGGAAGCTGGGGGTTTTGTCTTATGGGCAGGGACATGGCGGGTAGGTGGTGTTCTTGCAGTGTCTCGTGCATTCGGGGACAAG TTGCTGAAGGCATATGTTGTTGCAGAGCCAGAAATTCAGGAAGAAGAGATTGAAGGAGTAGATTTCATAATTGTTGCGAGCGATGGTCTATGGAACGCAC TGTCAAATCAGGAAGCGGTAAGTTTGATAGAGGACGTAATGGATGCAGAAGCAGCAGCACGAAAGCTGATAAAAGAAGCATACACTCGAGGAAGTTCAGA CAACATTACTTGTGTTGTGGTCCGTTTTGCATCCCAGTAA
AA sequence Show only first row Show all	>Lus10029745 pacid=23152097 polypeptide=Lus10029745 locus=Lus10029745.g ID=Lus10029745.BGIv1.0 annot-version=v1.0 MESSSLASASDQQEFDYLFKLLLIGDSGVGKSTLLLSFTSTSFEELSPTIGVDFKVKHVTVGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGVIMVYDVT RRETFTNLSDIWAKEIDLYSTNQDCIKMLVGNKVDKESERVVTKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETPSLIAEGSSGVKRKNIF QQKPAQDASASELQLATNFSLFLYLPSLINQAVGHYSFLLCRFRRRILFSSGCRCRSFKTFILLPTATNPPPPPTPPQPPATAVKQPESVPEPPLPGQSL SSLQQDADLMISNTDADALFSGGGLSRPAKFSYGYSSFKGKRPSMEDFYETKISEVDGQTVAFFGVFDGHGGARTAEYLKNNLFKNLSSHPGFTKDTKTA IFETFRDTDANYLKEEEGQKEAGSTASTAMLSGDRLLVANVGDSRVVASRAGSAIPLSMDHKPDRTDERQRIEEAGGFVLWAGTWRVGGVLAVSRAFGDK LLKAYVVAEPEIQEEEIEGVDFIIVASDGLWNALSNQEAVSLIEDVMDAEAAARKLIKEAYTRGSSDNITCVVVRFASQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G43900			Protein phosphatase 2C family ...		Lus10029745 [exp]	0	1
AT1G51260		LPAT3	lysophosphatidyl acyltransfera...		Lus10002556 [exp]	7.7	0.7658
AT3G59350			Protein kinase superfamily pro...		Lus10026706 [exp]	7.9	0.8189
AT5G16890			Exostosin family protein (.1)		Lus10013787 [exp]	10.3	0.7357
AT3G15410			Leucine-rich repeat (LRR) fami...		Lus10032667 [exp]	11.0	0.7811
AT4G08520			SNARE-like superfamily protein...		Lus10006883 [exp]	13.2	0.7836
AT1G71190		TTN4, SAG18	senescence associated gene 18 ...		Lus10001354 [exp]	16.6	0.7736
AT1G21900			emp24/gp25L/p24 family/GOLD fa...		Lus10041939 [exp]	19.4	0.7787
AT3G63420		AGG1, ATAGG1	Ggamma-subunit 1 (.1.2)		Lus10029687 [exp]	19.6	0.7292
AT1G60430		ARPC3	actin-related protein C3 (.1.2...		Lus10006335 [exp]	22.6	0.7815
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10008953 [exp]	24.7	0.7724

Compare expression of checked genes

Lus10029745 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.