Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25800 679 / 0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT3G50100 108 / 4e-25 SDN1 small RNA degrading nuclease 1 (.1) AT5G05540 102 / 1e-23 SDN2 small RNA degrading nuclease 2 (.1.2) AT5G67240 97 / 5e-21 SDN3 small RNA degrading nuclease 3 (.1.2) AT3G50090 85 / 8e-18 Exonuclease family protein (.1) AT3G15080 75 / 8e-15 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042779 [exp] 1040 / 0 AT5G25800 712 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10028637 [exp] 775 / 0 AT5G25800 641 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10018935 [exp] 771 / 0 AT5G25800 635 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10019321 [exp] 107 / 2e-24 AT5G67240 378 / 1e-122 small RNA degrading nuclease 3 (.1.2) Lus10011505 [exp] 103 / 2e-23 AT5G67240 358 / 1e-116 small RNA degrading nuclease 3 (.1.2) Lus10011504 [exp] 103 / 3e-23 AT5G67240 370 / 5e-119 small RNA degrading nuclease 3 (.1.2) Lus10000997 [exp] 69 / 9e-13 AT3G15080 325 / 4e-112 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10011026 [exp] 64 / 3e-11 AT3G15080 283 / 2e-96 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10019320 [exp] 62 / 3e-10 AT5G67240 214 / 2e-66 small RNA degrading nuclease 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G186600 [exp] 785 / 0 AT5G25800 752 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.002G073300 [exp] 271 / 2e-87 AT5G25800 233 / 3e-73 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.007G048000 [exp] 114 / 1e-26 AT5G67240 402 / 4e-132 small RNA degrading nuclease 3 (.1.2) Potri.001G373500 [exp] 74 / 2e-14 AT3G15080 346 / 1e-120 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.002G215700 [exp] 45 / 7e-05 AT2G48100 374 / 3e-129 Exonuclease family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF00929 [flax] [poplar] RNase_T Exonuclease
Representative CDS sequence Show only first row Show all	>Lus10029748 pacid=23152026 polypeptide=Lus10029748 locus=Lus10029748.g ID=Lus10029748.BGIv1.0 annot-version=v1.0 ATGCCGTTGCCGGAGCGTGGAAGCTCAGCCGTAGGTGGGGAGAAAGACGAGGAAAACGGCGCTTCCGTCAGAAAAACTTACTTCGATATCTATGGACCCG AAGCAAAGCCTGAAATTGCTTTTAAGTCACCAGAAGCTAGCTTGACTCTGGATCTGCAGGATATTCAAGGAATTGTGACTTGGGTGCTTGCTGAAGGAGA CATGCCTTCTTGGGTCTTTATCAAGAACAAGCCTCTGATTCCGAAAGTGGTTATGATTTATGTACCTGGGCTAGATGCAGCTTTGTACTTATCGAAACCC AAGTTGTTTGCTGGTTTTAAAGAATGCTGTGGAAAACCCAAGGGACAGTTAGCTATTAGCTGTGTAACAGATCGAATGCAGACAATTGATGCTCTTCTAA CATGCAAGTATAAAAGAAAGAGAGAGGAAGGCGATCCGGTCGTAAAGACATCTGAATCAGCTTCTGAAGAAGAGAAGAGTGCCCCAGACTTGAAAAATAT TTCTTTCTCGGAGCTTGTGAAAGGAGTGCCCTTTCCCCCTTCATATTATACGTTGACAATTGAACAACTAGAAGAAAATGGTTATTGTCCTGACAAACCA GGTCTTCTCTCTACCTCTCCAGCTCATAGTGGCTCTCCTCTACATGAAATCTTGGCACTTGATTGTGAAATGTGCATCACCAAAGACGGTTTTGAACTGA CAAGAATAACCCTGGTGGATATTGCAGGACAGGTATTGTTGGATAAATTGGTCAAACCGGTAAATGACATTGTTGATTACAATACCAGATTTAGTGGAAT TACATTAGAAATACTGAGTGGGGTGACTACAAGCCTTAAAGATGTTCAGGACGATTTCCTAAAACTGGTTCACCAAGAAACCATCCTCGTTGGTCACTCC CTAGAGAACGATTTATTAGCTCTAAAAATATCTCACAAATTGGTAATTGATACTGCTGTGCTATACAAACATCCACGAGGCCGGTCGTATAAAACTGCCC TTCGAATTCTGGCGAGGAAATTTCTCTCCAGGGAGATACAACAATCTGGTGTTGGACACGACAGTGCTGAGGATGCACGAGCTGCTTTGGAGCTCGCATT GCTAAAGATAAAAAATGGACCTGATTTTGGTGGTCCTCCTCGGCAATCCTTTACGCGGAAAAAGCTCATTTCAGTACTGGACGAGTGTGGCAAAACCTCA TCTGTAATTGATGATGTCTCCATAATAAAGCGCTATTCTACCGGAGCATCCCATGTGTTTCCTGTGGTTTCAGATGATGAAGCCCTTTTAAAGGCAATAA AAGAGGCAAAGAATGACCGGACACAATTCGTATGGACCCAGTTTTCAGAGTTAAATTCCTATTACGAGAAGCAAGCAGACGATGCCAAGATAGTAAATGG GAAGCTTGCAGAGATGATGTCACTGCTTACATGTGAAAATAAATCTATCAACAAGAAAGGCATTAATTGCAGAATGACAACTGAGTTGAAGGACATTATA GCTCGGTTGAATGGAAGGGTTCGTGCACTTTATTCAGCTTTACCGTCTAATACCATGCTCATCATTTGCACGGGTCATGGAGACACAGCAATTGTCAAGA AAGTGAGGAGGATGCTGGCGAACAACGAGACAAAGATGAGTAGGGAGAGCATTTTGAAGGTAGTGGAAGAGCTGCAAGCCCAAGCAGAAGTTGCTTTGTG TTTCCTGGGTTTGAAGAACTAG
AA sequence Show only first row Show all	>Lus10029748 pacid=23152026 polypeptide=Lus10029748 locus=Lus10029748.g ID=Lus10029748.BGIv1.0 annot-version=v1.0 MPLPERGSSAVGGEKDEENGASVRKTYFDIYGPEAKPEIAFKSPEASLTLDLQDIQGIVTWVLAEGDMPSWVFIKNKPLIPKVVMIYVPGLDAALYLSKP KLFAGFKECCGKPKGQLAISCVTDRMQTIDALLTCKYKRKREEGDPVVKTSESASEEEKSAPDLKNISFSELVKGVPFPPSYYTLTIEQLEENGYCPDKP GLLSTSPAHSGSPLHEILALDCEMCITKDGFELTRITLVDIAGQVLLDKLVKPVNDIVDYNTRFSGITLEILSGVTTSLKDVQDDFLKLVHQETILVGHS LENDLLALKISHKLVIDTAVLYKHPRGRSYKTALRILARKFLSREIQQSGVGHDSAEDARAALELALLKIKNGPDFGGPPRQSFTRKKLISVLDECGKTS SVIDDVSIIKRYSTGASHVFPVVSDDEALLKAIKEAKNDRTQFVWTQFSELNSYYEKQADDAKIVNGKLAEMMSLLTCENKSINKKGINCRMTTELKDII ARLNGRVRALYSALPSNTMLIICTGHGDTAIVKKVRRMLANNETKMSRESILKVVEELQAQAEVALCFLGLKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25800			Polynucleotidyl transferase, r...		Lus10029748 [exp]	0	1
AT5G11200			DEAD/DEAH box RNA helicase fam...		Lus10014260 [exp]	2.0	0.8855
AT1G73720		SMU1	SUPPRESSORS OF MEC-8 AND UNC-5...		Lus10038425 [exp]	2.4	0.8896
AT3G32940			RNA-binding KH domain-containi...		Lus10013751 [exp]	5.1	0.8535
AT2G03150		EMB1579	embryo defective 1579, ATP/GTP...		Lus10030445 [exp]	6.2	0.8765
AT5G46740		UBP21	ubiquitin-specific protease 21...		Lus10032623 [exp]	6.3	0.8660
AT3G12280		RB1, RBL1, RBR1...	RETINOBLASTOMA 1, RETINOBLASTO...		Lus10008667 [exp]	7.7	0.8667
AT5G07670			RNI-like superfamily protein (...		Lus10038927 [exp]	7.9	0.8605
AT1G80960			F-box and Leucine Rich Repeat ...		Lus10028602 [exp]	9.4	0.8417
AT1G09230			RNA-binding (RRM/RBD/RNP motif...		Lus10019754 [exp]	9.6	0.8330
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10024895 [exp]	11.7	0.8610

Compare expression of checked genes

Lus10029748 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.