Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38710 359 / 9e-128 AMMECR1 family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029751 [exp] 448 / 6e-163 AT2G38710 359 / 8e-128 AMMECR1 family (.1.2) Lus10042783 [exp] 429 / 1e-155 AT2G38710 360 / 2e-128 AMMECR1 family (.1.2) Lus10029750 [exp] 244 / 2e-83 AT2G38710 219 / 2e-73 AMMECR1 family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G240000 [exp] 388 / 2e-139 AT2G38710 346 / 1e-122 AMMECR1 family (.1.2) Potri.008G019200 [exp] 372 / 4e-133 AT2G38710 336 / 6e-119 AMMECR1 family (.1.2) Potri.008G019325 [exp] 185 / 4e-60 AT2G38710 176 / 1e-56 AMMECR1 family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01871 [flax] [poplar] AMMECR1 AMMECR1
Representative CDS sequence Show only first row Show all	>Lus10029754 pacid=23151950 polypeptide=Lus10029754 locus=Lus10029754.g ID=Lus10029754.BGIv1.0 annot-version=v1.0 ATGGTTTCCGCAAACAGGGAAATGGCTGTGTATTGCTTTGACACTCTCGTTGCTCACTATAACAACGAGGAAGCACCCCCTCCCGCCTTTGATGAGGGCC AACATCCATTGTTTGTCACTTGGAAGAAAGTGGTCAATGGTGGTGAGCCTCGTTTACGTGGATGCATTGGGACTTTGGAGTCTAGATACTTGATTAATGG ATTCAAGGACTATGCTTTAACCAGTGCTTTAAGGGACCGAAGGTTTCCTCCAATACAGGCAAAAGAGTTGCCTTCCCTAGAATGTACAGTGTCTATTCTA ACTGATTATGAAACTGCTAACAACTATCTTGACTGGGAGGTTGGGGTACATGGTATAATCATTGAATTTACTAGTCCTAACAACAATTCAAGGCAGAGTG CAACATATTTGCCTGAAGTGGCTGCACATGAAGGTTGGACGACAATGGAGGCGATCGAGTCGCTGATGCGCAAAGCTGGATACAATGGTCCAATCACCGA GTCACTTCGAAAGTCGATTAAACTAACCCGCTACCAGAGCACGCTTTTTACACTGACATTCAGCGACTATGTCGCATACGTGAAAGCAACAAGGGGTATG GCTCCAATTATTAACGGGGACACCAAGCTCGCCATGCATTAA
AA sequence Show only first row Show all	>Lus10029754 pacid=23151950 polypeptide=Lus10029754 locus=Lus10029754.g ID=Lus10029754.BGIv1.0 annot-version=v1.0 MVSANREMAVYCFDTLVAHYNNEEAPPPAFDEGQHPLFVTWKKVVNGGEPRLRGCIGTLESRYLINGFKDYALTSALRDRRFPPIQAKELPSLECTVSIL TDYETANNYLDWEVGVHGIIIEFTSPNNNSRQSATYLPEVAAHEGWTTMEAIESLMRKAGYNGPITESLRKSIKLTRYQSTLFTLTFSDYVAYVKATRGM APIINGDTKLAMH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38710			AMMECR1 family (.1.2)		Lus10029754 [exp]	0	1
AT2G38710			AMMECR1 family (.1.2)		Lus10029751 [exp]	1.0	0.9571
AT2G38710			AMMECR1 family (.1.2)		Lus10029750 [exp]	2.0	0.8886
AT2G38710			AMMECR1 family (.1.2)		Lus10042783 [exp]	3.5	0.8461
AT1G69510			cAMP-regulated phosphoprotein ...		Lus10030448 [exp]	14.2	0.7634
AT3G02100			UDP-Glycosyltransferase superf...		Lus10015744 [exp]	15.2	0.7619
AT1G59650		CW14	Protein of unknown function (D...		Lus10010740 [exp]	15.5	0.7654
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10034702 [exp]	21.6	0.7764
AT3G27950			GDSL-like Lipase/Acylhydrolase...		Lus10008784 [exp]	26.7	0.6754
AT4G01240			S-adenosyl-L-methionine-depend...		Lus10010138 [exp]	27.7	0.6677
AT1G16890		UBC36 ,UBC13B	UBIQUITIN CONJUGATING ENZYME 1...		Lus10033611 [exp]	29.2	0.7151

Compare expression of checked genes

Lus10029754 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.